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Merged
merged 1 commit into from
Jul 19, 2022
Merged

[pre-commit.ci] pre-commit autoupdate #1295

merged 1 commit into from
Jul 19, 2022

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@pre-commit-ci pre-commit-ci bot commented Jun 27, 2022 •
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@pre-commit-ci pre-commit-ci bot force-pushed the pre-commit-ci-update-config branch from dcf0ce7 to a581f66 Compare June 27, 2022 19:46
@pre-commit-ci pre-commit-ci bot force-pushed the pre-commit-ci-update-config branch 2 times, most recently from a71824a to 5f1b18e Compare July 11, 2022 20:41
@ax3l
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ax3l commented Jul 16, 2022

Interesting macOS SST error in `` @franzpoeschel :

27/38 Test #27: CLI.pipe.py .................................***Failed   15.03 sec
...
Iteration 400 contains 0 particle species:
[AbstractIOHandlerImpl] IO Task WRITE_ATT failed with exception. Removing task from IO queue and passing on the exception.
Traceback (most recent call last):
  File "/Users/runner/work/openPMD-api/openPMD-api/build/bin/openpmd-pipe", line 17, in <module>
    pipe.main()
  File "/Users/runner/work/openPMD-api/openPMD-api/build/lib/python3.9/site-packages/openpmd_api/pipe/__main__.py", line 334, in main
    run_pipe.run()
  File "/Users/runner/work/openPMD-api/openPMD-api/build/lib/python3.9/site-packages/openpmd_api/pipe/__main__.py", line 203, in run
    self.__copy(inseries, outseries)
  File "/Users/runner/work/openPMD-api/openPMD-api/build/lib/python3.9/site-packages/openpmd_api/pipe/__main__.py", line 272, in __copy
    out_iteration.close()
RuntimeError
[AbstractIOHandlerImpl] IO Task WRITE_ATT failed with exception. Removing task from IO queue and passing on the exception.
[~Series] An error occurred: [json.exception.parse_error.101] parse error at line 1, column 4902913: syntax error while parsing array - invalid literal; last read: '-922�'; expected ']'
[AbstractIOHandlerImpl] IO Task WRITE_ATT failed with exception. Removing task from IO queue and passing on the exception.
[~JSONIOHandlerImpl] An error occurred: [json.exception.parse_error.101] parse error at line 1, column 4902913: syntax error while parsing array - invalid literal; last read: '-922�'; expected ']'

I'll restart the run?

@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate
cd92456 
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.2.0 → v1.3.0](Lucas-C/pre-commit-hooks@v1.2.0...v1.3.0)
- [github.com/pre-commit/mirrors-clang-format: v14.0.5 → v14.0.6](pre-commit/mirrors-clang-format@v14.0.5...v14.0.6)
- [github.com/hadialqattan/pycln: v1.3.3 → v2.0.3](hadialqattan/pycln@v1.3.3...v2.0.3)
@pre-commit-ci pre-commit-ci bot force-pushed the pre-commit-ci-update-config branch from 5f1b18e to cd92456 Compare July 18, 2022 20:03
@franzpoeschel
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franzpoeschel commented Jul 19, 2022

Interesting macOS SST error in `` @franzpoeschel :

27/38 Test #27: CLI.pipe.py .................................***Failed   15.03 sec
...
Iteration 400 contains 0 particle species:
[AbstractIOHandlerImpl] IO Task WRITE_ATT failed with exception. Removing task from IO queue and passing on the exception.
Traceback (most recent call last):
  File "/Users/runner/work/openPMD-api/openPMD-api/build/bin/openpmd-pipe", line 17, in <module>
    pipe.main()
  File "/Users/runner/work/openPMD-api/openPMD-api/build/lib/python3.9/site-packages/openpmd_api/pipe/__main__.py", line 334, in main
    run_pipe.run()
  File "/Users/runner/work/openPMD-api/openPMD-api/build/lib/python3.9/site-packages/openpmd_api/pipe/__main__.py", line 203, in run
    self.__copy(inseries, outseries)
  File "/Users/runner/work/openPMD-api/openPMD-api/build/lib/python3.9/site-packages/openpmd_api/pipe/__main__.py", line 272, in __copy
    out_iteration.close()
RuntimeError
[AbstractIOHandlerImpl] IO Task WRITE_ATT failed with exception. Removing task from IO queue and passing on the exception.
[~Series] An error occurred: [json.exception.parse_error.101] parse error at line 1, column 4902913: syntax error while parsing array - invalid literal; last read: '-922�'; expected ']'
[AbstractIOHandlerImpl] IO Task WRITE_ATT failed with exception. Removing task from IO queue and passing on the exception.
[~JSONIOHandlerImpl] An error occurred: [json.exception.parse_error.101] parse error at line 1, column 4902913: syntax error while parsing array - invalid literal; last read: '-922�'; expected ']'

I'll restart the run?

I just saw the same thing in some entirely unrelated PR. We should maybe keep out an eye for it

@franzpoeschel franzpoeschel enabled auto-merge (squash) July 19, 2022 10:25
@franzpoeschel franzpoeschel merged commit 43e2b32 into dev Jul 19, 2022
@ax3l ax3l deleted the pre-commit-ci-update-config branch July 19, 2022 14:52
eschnett added a commit to eschnett/openPMD-api that referenced this pull request Nov 11, 2022
@eschnett
Merge branch 'dev' into eschnett/julia-bindings
e6a18e7 
* dev: (70 commits)
  Docs: Recommend Static Build for Superbuilds (openPMD#1325)
  Python 3.11 (openPMD#1323)
  pybind11: v2.10.1+ (openPMD#1322)
  Add Attribute::getOptional<T>() and use to add some more dynamic datatype conversions at read time (openPMD#1278)
  Mapping between ADIOS steps and openPMD iterations (openPMD#949)
  Deprecate shareRaw (openPMD#1229)
  Fix append mode double attributes (openPMD#1302)
  Constant scalars: Don't flush double (openPMD#1315)
  Remove caching cmake vars (openPMD#1313)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1311)
  storeChunk: Add an overload for shared_ptr<T[]> (openPMD#1296)
  Fix `operationAsString` Export (openPMD#1309)
  ADIOS2: more fine-grained control for file endings (openPMD#1218)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1307)
  Fix file existence check in parallel tests (openPMD#1303)
  ADIOS2: Flush to disk within a step (openPMD#1207)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1304)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1295)
  Update catch2 to v2.13.9 (openPMD#1299)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1292)
  ...

# Conflicts:
#	.github/workflows/linux.yml
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@ax3l @franzpoeschel