diff --git a/CHANGELOG.md b/CHANGELOG.md index 1328c3c95..e1f943c01 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,10 +9,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 Special thanks to the following for their contributions to the release: -- [Jonathan Manning](https://github.com/pinin4fjords) -- [Maxime Garcia](https://github.com/maxulysse) - [Friederike Hanssen](https://github.com/friederikehanssen) - [Ido Tamir](https://github.com/idot) +- [Jonathan Manning](https://github.com/pinin4fjords) +- [Maxime Garcia](https://github.com/maxulysse) - [Usman Rashid](https://github.com/GallVp) ### Enhancements & fixes @@ -23,6 +23,7 @@ Special thanks to the following for their contributions to the release: - [PR #1585](https://github.com/nf-core/rnaseq/pull/1585) - Update awsfulltest.yml to restore aligner-wise outputs - [PR #1580](https://github.com/nf-core/rnaseq/pull/1580) - Template update for nf-core/tools v3.3.2 - [PR #1590](https://github.com/nf-core/rnaseq/pull/1590) - Addition of Sentieon STAR +- [PR #1594](https://github.com/nf-core/rnaseq/pull/1594) - Exclude star rsem pca from snaps ### Software dependencies diff --git a/tests/.nftignore b/tests/.nftignore index fe676af4a..bf77cd484 100644 --- a/tests/.nftignore +++ b/tests/.nftignore @@ -67,6 +67,7 @@ umitools/*.umi_extract.log {multiqc,multiqc/**}/multiqc_report_data/multiqc_sortmerna.txt {multiqc,multiqc/**}/multiqc_report_data/multiqc_sources.txt {multiqc,multiqc/**}/multiqc_report_data/multiqc_star.txt +{multiqc,multiqc/**}/multiqc_report_data/multiqc_star_rsem_deseq2_pca.txt {multiqc,multiqc/**}/multiqc_report_data/multiqc_star_salmon_deseq2_clustering.txt {multiqc,multiqc/**}/multiqc_report_data/multiqc_star_salmon_deseq2_pca.txt {multiqc,multiqc/**}/multiqc_report_data/multiqc_umitools_dedup.txt diff --git a/tests/sentieon_star_rsem.nf.test.snap b/tests/sentieon_star_rsem.nf.test.snap index eb93cd46b..2f9028da7 100644 --- a/tests/sentieon_star_rsem.nf.test.snap +++ b/tests/sentieon_star_rsem.nf.test.snap @@ -1183,7 +1183,6 @@ "multiqc_featurecounts_biotype_plot.txt:md5,16081809f893eca4d9914fd370e7fbd7", "multiqc_samtools_idxstats.txt:md5,1cbc64fc9713831a6f45effc0cfe6a39", "multiqc_star_rsem_deseq2_clustering.txt:md5,31eb7afda40af27a3c8f731bbe19e892", - "multiqc_star_rsem_deseq2_pca.txt:md5,43c73aa0e2b7d2fe7e2b970e39fd550e", "picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e", "picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e", "picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e", @@ -1396,4 +1395,4 @@ }, "timestamp": "2025-06-03T20:30:37.383920745" } -} \ No newline at end of file +} diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap index 590d1930f..4cbdd3641 100644 --- a/tests/star_rsem.nf.test.snap +++ b/tests/star_rsem.nf.test.snap @@ -1182,7 +1182,6 @@ "multiqc_featurecounts_biotype_plot.txt:md5,16081809f893eca4d9914fd370e7fbd7", "multiqc_samtools_idxstats.txt:md5,1cbc64fc9713831a6f45effc0cfe6a39", "multiqc_star_rsem_deseq2_clustering.txt:md5,31eb7afda40af27a3c8f731bbe19e892", - "multiqc_star_rsem_deseq2_pca.txt:md5,43c73aa0e2b7d2fe7e2b970e39fd550e", "picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e", "picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e", "picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e", @@ -1395,4 +1394,4 @@ }, "timestamp": "2025-06-03T20:30:37.383920745" } -} \ No newline at end of file +}