From 952696c83bd7aa89834e349b1f19a87efc40aba3 Mon Sep 17 00:00:00 2001 From: Ido Tamir Date: Tue, 17 Jun 2025 16:15:04 +0200 Subject: [PATCH 1/4] ignore umi_dedup.transcriptome.sorted.log, only umi_dedup.sorted.log --- workflows/rnaseq/assets/multiqc/multiqc_config.yml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index 9a98b1705..a4044b0d4 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -210,6 +210,11 @@ sp: picard/wgs_metrics: skip: true + +fn_ignore_files: + - "*umi_dedup.transcriptome.sorted.log" + + # See https://github.com/ewels/MultiQC_TestData/blob/master/data/custom_content/with_config/table_headerconfig/multiqc_config.yaml custom_data: fail_trimmed_samples: From 58e7357fb7caeb1195fa287527e30d2110053165 Mon Sep 17 00:00:00 2001 From: Ido Tamir Date: Tue, 17 Jun 2025 16:16:59 +0200 Subject: [PATCH 2/4] changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0e3040977..fa6715c43 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,6 +15,7 @@ Special thanks to the following for their contributions to the release: ### Enhancements & fixes - [PR #1568](https://github.com/nf-core/rnaseq/pull/1568) - Bump version after release 3.19.0 +- [PR #1570](https://github.com/nf-core/rnaseq/pull/1570) - For umitools use only umi_dedup.sorted.log in multiqc_report ## [[3.19.0](https://github.com/nf-core/rnaseq/releases/tag/3.19.0)] - 2025-06-10 From 4d8ff15d03b83e7cfea1934e0f2c55be42a7e150 Mon Sep 17 00:00:00 2001 From: Ido Tamir Date: Tue, 17 Jun 2025 16:23:36 +0200 Subject: [PATCH 3/4] changelog PR# correct --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index fa6715c43..7a66d4ed2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,7 +15,7 @@ Special thanks to the following for their contributions to the release: ### Enhancements & fixes - [PR #1568](https://github.com/nf-core/rnaseq/pull/1568) - Bump version after release 3.19.0 -- [PR #1570](https://github.com/nf-core/rnaseq/pull/1570) - For umitools use only umi_dedup.sorted.log in multiqc_report +- [PR #1571](https://github.com/nf-core/rnaseq/pull/1571) - For umitools use only umi_dedup.sorted.log in multiqc_report ## [[3.19.0](https://github.com/nf-core/rnaseq/releases/tag/3.19.0)] - 2025-06-10 From 88e05e45e8881ecc7d62203f9298c178a15ab036 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 13 Aug 2025 16:49:32 +0100 Subject: [PATCH 4/4] remove excess whitespace --- workflows/rnaseq/assets/multiqc/multiqc_config.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index a4044b0d4..bd24bc156 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -210,11 +210,9 @@ sp: picard/wgs_metrics: skip: true - fn_ignore_files: - "*umi_dedup.transcriptome.sorted.log" - # See https://github.com/ewels/MultiQC_TestData/blob/master/data/custom_content/with_config/table_headerconfig/multiqc_config.yaml custom_data: fail_trimmed_samples: