diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3419ba5c6..0db7deb44 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-## dev
+## [[3.16.1](https://github.com/nf-core/rnaseq/releases/tag/3.16.1)] - 2024-10-16
### Credits
@@ -19,6 +19,7 @@ Special thanks to the following for their contributions to the release:
- [PR #1405](https://github.com/nf-core/rnaseq/pull/1405) - Fix bad variable name in subworkflow
- [PR #1406](https://github.com/nf-core/rnaseq/pull/1406) - Keep only one samplesheetToList
- [PR #1410](https://github.com/nf-core/rnaseq/pull/1410) - Fix issues caused by empty versions from trimming subworkflows
+- [PR #1412](https://github.com/nf-core/rnaseq/pull/1412) - Reset versions back to 3.16.1 for patch release
### Parameters
diff --git a/nextflow.config b/nextflow.config
index 84ef3cabf..496a9429f 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -327,7 +327,7 @@ manifest {
description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
mainScript = 'main.nf'
nextflowVersion = '!>=24.04.2'
- version = '3.17.0dev'
+ version = '3.16.1'
doi = 'https://doi.org/10.5281/zenodo.1400710'
}
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index ea663624c..c9981b3d1 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -227,7 +227,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
index 9630b4c5d..b14b204a7 100644
--- a/tests/featurecounts_group_type.nf.test.snap
+++ b/tests/featurecounts_group_type.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -221,7 +221,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
index f6fe94c7e..dd6b9d23e 100644
--- a/tests/hisat2.nf.test.snap
+++ b/tests/hisat2.nf.test.snap
@@ -44,7 +44,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -224,7 +224,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
index 215a901a4..4cc4ac925 100644
--- a/tests/kallisto.nf.test.snap
+++ b/tests/kallisto.nf.test.snap
@@ -56,7 +56,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -294,7 +294,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
index a494f6029..2799bc339 100644
--- a/tests/min_mapped_reads.nf.test.snap
+++ b/tests/min_mapped_reads.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -1221,7 +1221,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
index f10e886fe..4b477e6a7 100644
--- a/tests/remove_ribo_rna.nf.test.snap
+++ b/tests/remove_ribo_rna.nf.test.snap
@@ -140,7 +140,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -1435,7 +1435,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
index 451c2918f..0293e72fa 100644
--- a/tests/salmon.nf.test.snap
+++ b/tests/salmon.nf.test.snap
@@ -50,7 +50,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -367,7 +367,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
index 476f26117..70b17efcb 100644
--- a/tests/skip_qc.nf.test.snap
+++ b/tests/skip_qc.nf.test.snap
@@ -40,7 +40,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -169,7 +169,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
index 82acf3cfd..bfc0873a4 100644
--- a/tests/skip_trimming.nf.test.snap
+++ b/tests/skip_trimming.nf.test.snap
@@ -130,7 +130,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
index 9d17e1f2d..d46ed0819 100644
--- a/tests/star_rsem.nf.test.snap
+++ b/tests/star_rsem.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
@@ -1314,7 +1314,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.16.1"
}
},
[
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
index 9b8ee731a..260cc8c1d 100644
--- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml
+++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,5 +1,5 @@
report_comment: >
- This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
+ This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
report_section_order:
# Important checks and failures
sample-status: