From 0fed9842abca4a0b0ef1b60483ae9ba76ea2cd09 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Thu, 11 Dec 2025 18:15:38 +0000 Subject: [PATCH] Add BBSplit stats to MultiQC files in fastq_qc_trim_filter_setstrandedness MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Pass BBSplit stats output to MultiQC for visualization of read binning statistics. MultiQC 1.33+ includes support for parsing BBSplit stats.txt files and displaying per-sample read distribution across reference genomes. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .../nf-core/fastq_qc_trim_filter_setstrandedness/main.nf | 1 + 1 file changed, 1 insertion(+) diff --git a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf index 84a029b30754..1ebada6e0d2e 100644 --- a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf +++ b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf @@ -257,6 +257,7 @@ workflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS { BBMAP_BBSPLIT.out.primary_fastq.set { ch_filtered_reads } ch_versions = ch_versions.mix(BBMAP_BBSPLIT.out.versions.first()) + ch_multiqc_files = ch_multiqc_files.mix(BBMAP_BBSPLIT.out.stats) if (!skip_linting) { FQ_LINT_AFTER_BBSPLIT(