Apr-01 17:20:49.291 [main] DEBUG nextflow.cli.Launcher - $> nextflow run test1.nf Apr-01 17:20:49.405 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 22.10.1 Apr-01 17:20:49.425 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/tsd/p33/home/p33-mohammadzr/.nextflow/plugins; core-plugins: nf-amazon@1.11.0,nf-azure@0.14.2,nf-codecommit@0.1.2,nf-console@1.0.4,nf-ga4gh@1.0.4,nf-google@1.4.4,nf-tower@1.5.5,nf-wave@0.5.2 Apr-01 17:20:49.437 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] Apr-01 17:20:49.439 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] Apr-01 17:20:49.442 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode Apr-01 17:20:49.453 [main] INFO org.pf4j.AbstractPluginManager - No plugins Apr-01 17:20:49.515 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=1 from script declararion Apr-01 17:20:49.534 [main] INFO nextflow.cli.CmdRun - Launching `test1.nf` [berserk_gutenberg] DSL1 - revision: d42d404eeb Apr-01 17:20:49.534 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[] Apr-01 17:20:49.534 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[] Apr-01 17:20:49.544 [main] DEBUG nextflow.secret.LocalSecretsProvider - Secrets store: /tsd/p33/home/p33-mohammadzr/.nextflow/secrets/store.json Apr-01 17:20:49.551 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@21fdfefc] - activable => nextflow.secret.LocalSecretsProvider@21fdfefc Apr-01 17:20:49.638 [main] DEBUG nextflow.Session - Session UUID: 94979b57-917d-4f6d-b2e2-e476eee9606e Apr-01 17:20:49.638 [main] DEBUG nextflow.Session - Run name: berserk_gutenberg Apr-01 17:20:49.639 [main] DEBUG nextflow.Session - Executor pool size: 256 Apr-01 17:20:49.649 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=768; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false Apr-01 17:20:49.680 [main] DEBUG nextflow.cli.CmdRun - Version: 22.10.1 build 5828 Created: 27-10-2022 16:58 UTC (18:58 CEST) System: Linux 3.10.0-1160.88.1.el7.x86_64 Runtime: Groovy 3.0.13 on OpenJDK 64-Bit Server VM 11.0.1+13 Encoding: UTF-8 (UTF-8) Process: 27169@p33-appn-norment01.tsd.usit.no [10.33.0.30] CPUs: 256 - Mem: 1.5 TB (289.1 GB) - Swap: 2 TB (2 TB) Apr-01 17:20:49.716 [main] DEBUG nextflow.Session - Work-dir: /ess/p33/cluster/users/gledak/mostest/work [nfs] Apr-01 17:20:49.717 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /ess/p33/cluster/users/gledak/mostest/bin Apr-01 17:20:49.730 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[] Apr-01 17:20:49.741 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory Apr-01 17:20:49.763 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory Apr-01 17:20:49.776 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 257; maxThreads: 1000 Apr-01 17:20:50.041 [main] DEBUG nextflow.Session - Session start Apr-01 17:20:50.543 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution Apr-01 17:20:50.563 [main] DEBUG nextflow.Session - Session aborted -- Cause: Cannot invoke method view() on null object Apr-01 17:20:50.593 [main] ERROR nextflow.cli.Launcher - @unknown java.lang.NullPointerException: Cannot invoke method view() on null object at org.codehaus.groovy.runtime.NullObject.invokeMethod(NullObject.java:91) at org.codehaus.groovy.runtime.callsite.PogoMetaClassSite.call(PogoMetaClassSite.java:44) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47) at org.codehaus.groovy.runtime.callsite.NullCallSite.call(NullCallSite.java:34) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:125) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:130) at Script_603a4f1c.runScript(Script_603a4f1c:2) at nextflow.script.BaseScript.runDsl1(BaseScript.groovy:164) at nextflow.script.BaseScript.run(BaseScript.groovy:217) at nextflow.script.ScriptParser.runScript(ScriptParser.groovy:230) at nextflow.script.ScriptRunner.run(ScriptRunner.groovy:225) at nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:131) at nextflow.cli.CmdRun.run(CmdRun.groovy:354) at nextflow.cli.Launcher.run(Launcher.groovy:487) at nextflow.cli.Launcher.main(Launcher.groovy:646)