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tximeta support for single-cell outputs from oarfish

Status: Open.

#89 In thelovelab/tximeta;

· lianov opened on Jul 25, 2025

summarizeToGene should bring over gene-level rowData when possible

enhancement

Status: Open.

#85 In thelovelab/tximeta;

· mikelove opened on Feb 4, 2025

When disconnected still sometimes error trying to get seqinfo

bug

Status: Open.

#75 In thelovelab/tximeta;

· mikelove opened on Aug 1, 2023

If skipMeta=TRUE, still could put Salmon version etc

Status: Open.

#61 In thelovelab/tximeta;

· mikelove opened on Dec 17, 2021

dtuScaledTPM doesn't work

Status: Open.

#53 In thelovelab/tximeta;

· mikelove opened on Dec 16, 2020

tximeta "couldn't find matching transcriptome, returning un-ranged SummarizedExperiment"

Status: Open.

#38 In thelovelab/tximeta;

· mikelove opened on Jun 24, 2020

Generate Methods section boilerplate text

enhancement

Status: Open.

#23 In thelovelab/tximeta;

· mikelove opened on Dec 30, 2019

Missing my favorite organism/source [please add as a comment to this issue]

enhancement

Status: Open.

#13 In thelovelab/tximeta;

· mikelove opened on Nov 1, 2018