forked from SciTools/iris-grib
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy path__init__.py
More file actions
847 lines (712 loc) · 33.9 KB
/
Copy path__init__.py
File metadata and controls
847 lines (712 loc) · 33.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
# Copyright iris-grib contributors
#
# This file is part of iris-grib and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""
Conversion of cubes to/from GRIB.
See: `ECMWF GRIB API <https://software.ecmwf.int/wiki/display/GRIB/Home>`_.
"""
import datetime
import math # for fmod
import cartopy.crs as ccrs
import cf_units
import gribapi
import numpy as np
import numpy.ma as ma
# NOTE: careful here, to avoid circular imports (as iris imports grib)
import iris # noqa: F401
from iris._lazy_data import as_lazy_data
import iris.coord_systems as coord_systems
from iris.exceptions import TranslationError, NotYetImplementedError
from . import grib_phenom_translation as gptx
from . import _save_rules
from ._load_convert import convert as load_convert
from .message import GribMessage
__version__ = '0.18.dev0'
__all__ = ['load_cubes', 'save_grib2', 'load_pairs_from_fields',
'save_pairs_from_cube', 'save_messages']
CENTRE_TITLES = {'egrr': 'U.K. Met Office - Exeter',
'ecmf': 'European Centre for Medium Range Weather Forecasts',
'rjtd': 'Tokyo, Japan Meteorological Agency',
'55': 'San Francisco',
'kwbc': ('US National Weather Service, National Centres for '
'Environmental Prediction')}
TIME_RANGE_INDICATORS = {0: 'none', 1: 'none', 3: 'time mean', 4: 'time sum',
5: 'time _difference', 10: 'none',
# TODO #567 Further exploration of following mappings
51: 'time mean', 113: 'time mean', 114: 'time sum',
115: 'time mean', 116: 'time sum', 117: 'time mean',
118: 'time _covariance', 123: 'time mean',
124: 'time sum', 125: 'time standard_deviation'}
PROCESSING_TYPES = {0: 'time mean', 1: 'time sum', 2: 'time maximum',
3: 'time minimum', 4: 'time _difference',
5: 'time _root mean square', 6: 'time standard_deviation',
7: 'time _convariance', 8: 'time _difference',
9: 'time _ratio'}
TIME_CODES_EDITION1 = {
0: ('minutes', 60),
1: ('hours', 60*60),
2: ('days', 24*60*60),
# NOTE: do *not* support calendar-dependent units at all.
# So the following possible keys remain unsupported:
# 3: 'months',
# 4: 'years',
# 5: 'decades',
# 6: '30 years',
# 7: 'century',
10: ('3 hours', 3*60*60),
11: ('6 hours', 6*60*60),
12: ('12 hours', 12*60*60),
13: ('15 minutes', 15*60),
14: ('30 minutes', 30*60),
254: ('seconds', 1),
}
unknown_string = "???"
class GribDataProxy:
"""A reference to the data payload of a single Grib message."""
__slots__ = ('shape', 'dtype', 'path', 'offset')
def __init__(self, shape, dtype, path, offset):
self.shape = shape
self.dtype = dtype
self.path = path
self.offset = offset
@property
def ndim(self):
return len(self.shape)
def __getitem__(self, keys):
with open(self.path, 'rb') as grib_fh:
grib_fh.seek(self.offset)
grib_message = gribapi.grib_new_from_file(grib_fh)
data = _message_values(grib_message, self.shape)
gribapi.grib_release(grib_message)
result = data.__getitem__(keys)
return result
def __repr__(self):
msg = '<{self.__class__.__name__} shape={self.shape} ' \
'dtype={self.dtype!r} ' \
'path={self.path!r} offset={self.offset}>'
return msg.format(self=self)
def __getstate__(self):
return {attr: getattr(self, attr) for attr in self.__slots__}
def __setstate__(self, state):
for key, value in state.items():
setattr(self, key, value)
class GribWrapper:
"""
Contains a pygrib object plus some extra keys of our own.
The class :class:`iris_grib.message.GribMessage`
provides alternative means of working with GRIB message instances.
"""
def __init__(self, grib_message, grib_fh=None):
"""Store the grib message and compute our extra keys."""
self.grib_message = grib_message
if self.edition != 1:
emsg = 'GRIB edition {} is not supported by {!r}.'
raise TranslationError(emsg.format(self.edition,
type(self).__name__))
deferred = grib_fh is not None
# Store the file pointer and message length from the current
# grib message before it's changed by calls to the grib-api.
if deferred:
# Note that, the grib-api has already read this message and
# advanced the file pointer to the end of the message.
offset = grib_fh.tell()
message_length = gribapi.grib_get_long(grib_message, 'totalLength')
# Initialise the key-extension dictionary.
# NOTE: this attribute *must* exist, or the the __getattr__ overload
# can hit an infinite loop.
self.extra_keys = {}
self._confirm_in_scope()
self._compute_extra_keys()
# Calculate the data payload shape.
shape = (gribapi.grib_get_long(grib_message, 'numberOfValues'),)
if not self.gridType.startswith('reduced'):
ni, nj = self.Ni, self.Nj
j_fast = gribapi.grib_get_long(grib_message,
'jPointsAreConsecutive')
shape = (nj, ni) if j_fast == 0 else (ni, nj)
if deferred:
# Wrap the reference to the data payload within the data proxy
# in order to support deferred data loading.
# The byte offset requires to be reset back to the first byte
# of this message. The file pointer offset is always at the end
# of the current message due to the grib-api reading the message.
proxy = GribDataProxy(shape, np.array([0.]).dtype, grib_fh.name,
offset - message_length)
self._data = as_lazy_data(proxy)
else:
self.data = _message_values(grib_message, shape)
def _confirm_in_scope(self):
"""Ensure we have a grib flavour that we choose to support."""
# forbid alternate row scanning
# (uncommon entry from GRIB2 flag table 3.4, also in GRIB1)
if self.alternativeRowScanning == 1:
raise ValueError("alternativeRowScanning == 1 not handled.")
def __getattr__(self, key):
"""Return a grib key, or one of our extra keys."""
# is it in the grib message?
try:
# we just get <type 'float'> as the type of the "values"
# array...special case here...
if key in ["values", "pv", "latitudes", "longitudes"]:
res = gribapi.grib_get_double_array(self.grib_message, key)
elif key in ('typeOfFirstFixedSurface',
'typeOfSecondFixedSurface'):
res = np.int32(gribapi.grib_get_long(self.grib_message, key))
else:
key_type = gribapi.grib_get_native_type(self.grib_message, key)
if key_type == int:
res = np.int32(gribapi.grib_get_long(self.grib_message,
key))
elif key_type == float:
# Because some computer keys are floats, like
# longitudeOfFirstGridPointInDegrees, a float32
# is not always enough...
res = np.float64(gribapi.grib_get_double(self.grib_message,
key))
elif key_type == str:
res = gribapi.grib_get_string(self.grib_message, key)
else:
emsg = "Unknown type for {} : {}"
raise ValueError(emsg.format(key, str(key_type)))
except gribapi.errors.GribInternalError:
res = None
# ...or is it in our list of extras?
if res is None:
if key in self.extra_keys:
res = self.extra_keys[key]
else:
# must raise an exception for the hasattr() mechanism to work
raise AttributeError("Cannot find GRIB key %s" % key)
return res
def _timeunit_detail(self):
"""Return the (string, seconds) describing the message time unit."""
unit_code = self.indicatorOfUnitOfTimeRange
if unit_code not in TIME_CODES_EDITION1:
message = 'Unhandled time unit for forecast ' \
'indicatorOfUnitOfTimeRange : ' + str(unit_code)
raise NotYetImplementedError(message)
return TIME_CODES_EDITION1[unit_code]
def _timeunit_string(self):
"""Get the udunits string for the message time unit."""
return self._timeunit_detail()[0]
def _timeunit_seconds(self):
"""Get the number of seconds in the message time unit."""
return self._timeunit_detail()[1]
def _compute_extra_keys(self):
"""Compute our extra keys."""
global unknown_string
self.extra_keys = {}
forecastTime = self.startStep
# regular or rotated grid?
try:
longitudeOfSouthernPoleInDegrees = \
self.longitudeOfSouthernPoleInDegrees
latitudeOfSouthernPoleInDegrees = \
self.latitudeOfSouthernPoleInDegrees
except AttributeError:
longitudeOfSouthernPoleInDegrees = 0.0
latitudeOfSouthernPoleInDegrees = 90.0
centre = gribapi.grib_get_string(self.grib_message, "centre")
# default values
self.extra_keys = {'_referenceDateTime': -1.0,
'_phenomenonDateTime': -1.0,
'_periodStartDateTime': -1.0,
'_periodEndDateTime': -1.0,
'_levelTypeName': unknown_string,
'_levelTypeUnits': unknown_string,
'_firstLevelTypeName': unknown_string,
'_firstLevelTypeUnits': unknown_string,
'_firstLevel': -1.0,
'_secondLevelTypeName': unknown_string,
'_secondLevel': -1.0,
'_originatingCentre': unknown_string,
'_forecastTime': None,
'_forecastTimeUnit': unknown_string,
'_coord_system': None,
'_x_circular': False,
'_x_coord_name': unknown_string,
'_y_coord_name': unknown_string,
# These are here to avoid repetition in the rules
# files, and reduce the very long line lengths.
'_x_points': None,
'_y_points': None,
'_cf_data': None}
# cf phenomenon translation
# Get centre code (N.B. self.centre has default type = string)
centre_number = gribapi.grib_get_long(self.grib_message, "centre")
# Look for a known grib1-to-cf translation (or None).
cf_data = gptx.grib1_phenom_to_cf_info(
table2_version=self.table2Version,
centre_number=centre_number,
param_number=self.indicatorOfParameter)
self.extra_keys['_cf_data'] = cf_data
# reference date
self.extra_keys['_referenceDateTime'] = \
datetime.datetime(int(self.year), int(self.month), int(self.day),
int(self.hour), int(self.minute))
# forecast time with workarounds
self.extra_keys['_forecastTime'] = forecastTime
# verification date
processingDone = self._get_processing_done()
# time processed?
if processingDone.startswith("time"):
validityDate = str(self.validityDate)
validityTime = "{:04}".format(int(self.validityTime))
endYear = int(validityDate[:4])
endMonth = int(validityDate[4:6])
endDay = int(validityDate[6:8])
endHour = int(validityTime[:2])
endMinute = int(validityTime[2:4])
# fixed forecastTime in hours
self.extra_keys['_periodStartDateTime'] = \
(self.extra_keys['_referenceDateTime'] +
datetime.timedelta(hours=int(forecastTime)))
self.extra_keys['_periodEndDateTime'] = \
datetime.datetime(endYear, endMonth, endDay, endHour,
endMinute)
else:
self.extra_keys['_phenomenonDateTime'] = \
self._get_verification_date()
# originating centre
# TODO #574 Expand to include sub-centre
self.extra_keys['_originatingCentre'] = CENTRE_TITLES.get(
centre, "unknown centre %s" % centre)
# forecast time unit as a cm string
# TODO #575 Do we want PP or GRIB style forecast delta?
self.extra_keys['_forecastTimeUnit'] = self._timeunit_string()
# shape of the earth
soe_code = self.shapeOfTheEarth
# As this class is now *only* for GRIB1, 'shapeOfTheEarth' is not a
# value read from the actual file : It is really a GRIB2 param, and
# the value is merely what eccodes (gribapi) gives as the default.
# This was always = 6, until eccodes 0.19, when it changed to 0.
# See https://jira.ecmwf.int/browse/ECC-811
# The two represent different sized spherical earths.
if soe_code not in (6, 0):
raise ValueError('Unexpected shapeOfTheEarth value =', soe_code)
soe_code = 6
# *FOR NOW* maintain the old behaviour (radius=6371229) in all cases,
# for backwards compatibility.
# However, this does not match the 'radiusOfTheEarth' default from the
# gribapi so is probably incorrect (see above issue ECC-811).
# So we may change this in future.
if soe_code == 0:
# New supposedly-correct default value, matches 'radiusOfTheEarth'.
geoid = coord_systems.GeogCS(semi_major_axis=6367470)
elif soe_code == 6:
# Old value, does *not* match the 'radiusOfTheEarth' parameter.
geoid = coord_systems.GeogCS(6371229)
gridType = gribapi.grib_get_string(self.grib_message, "gridType")
if gridType in ["regular_ll", "regular_gg", "reduced_ll",
"reduced_gg"]:
self.extra_keys['_x_coord_name'] = "longitude"
self.extra_keys['_y_coord_name'] = "latitude"
self.extra_keys['_coord_system'] = geoid
elif gridType == 'rotated_ll':
# TODO: Confirm the translation from angleOfRotation to
# north_pole_lon (usually 0 for both)
self.extra_keys['_x_coord_name'] = "grid_longitude"
self.extra_keys['_y_coord_name'] = "grid_latitude"
southPoleLon = longitudeOfSouthernPoleInDegrees
southPoleLat = latitudeOfSouthernPoleInDegrees
self.extra_keys['_coord_system'] = \
coord_systems.RotatedGeogCS(
-southPoleLat,
math.fmod(southPoleLon + 180.0, 360.0),
self.angleOfRotation, geoid)
elif gridType == 'polar_stereographic':
self.extra_keys['_x_coord_name'] = "projection_x_coordinate"
self.extra_keys['_y_coord_name'] = "projection_y_coordinate"
if self.projectionCentreFlag == 0:
pole_lat = 90
elif self.projectionCentreFlag == 1:
pole_lat = -90
else:
raise TranslationError("Unhandled projectionCentreFlag")
# Note: I think the grib api defaults LaDInDegrees to 60 for grib1.
self.extra_keys['_coord_system'] = \
coord_systems.Stereographic(
pole_lat, self.orientationOfTheGridInDegrees, 0, 0,
self.LaDInDegrees, ellipsoid=geoid)
elif gridType == 'lambert':
self.extra_keys['_x_coord_name'] = "projection_x_coordinate"
self.extra_keys['_y_coord_name'] = "projection_y_coordinate"
flag_name = "projectionCenterFlag"
if getattr(self, flag_name) == 0:
pole_lat = 90
elif getattr(self, flag_name) == 1:
pole_lat = -90
else:
raise TranslationError("Unhandled projectionCentreFlag")
LambertConformal = coord_systems.LambertConformal
self.extra_keys['_coord_system'] = LambertConformal(
self.LaDInDegrees, self.LoVInDegrees, 0, 0,
secant_latitudes=(self.Latin1InDegrees, self.Latin2InDegrees),
ellipsoid=geoid)
else:
raise TranslationError("unhandled grid type: {}".format(gridType))
if gridType in ["regular_ll", "rotated_ll"]:
self._regular_longitude_common()
j_step = self.jDirectionIncrementInDegrees
if not self.jScansPositively:
j_step = -j_step
self._y_points = (np.arange(self.Nj, dtype=np.float64) * j_step +
self.latitudeOfFirstGridPointInDegrees)
elif gridType in ['regular_gg']:
# longitude coordinate is straight-forward
self._regular_longitude_common()
# get the distinct latitudes, and make sure they are sorted
# (south-to-north) and then put them in the right direction
# depending on the scan direction
latitude_points = gribapi.grib_get_double_array(
self.grib_message, 'distinctLatitudes').astype(np.float64)
latitude_points.sort()
if not self.jScansPositively:
# we require latitudes north-to-south
self._y_points = latitude_points[::-1]
else:
self._y_points = latitude_points
elif gridType in ["polar_stereographic", "lambert"]:
# convert the starting latlon into meters
cartopy_crs = self.extra_keys['_coord_system'].as_cartopy_crs()
x1, y1 = cartopy_crs.transform_point(
self.longitudeOfFirstGridPointInDegrees,
self.latitudeOfFirstGridPointInDegrees,
ccrs.Geodetic())
if not np.all(np.isfinite([x1, y1])):
raise TranslationError("Could not determine the first latitude"
" and/or longitude grid point.")
self._x_points = x1 + self.DxInMetres * np.arange(self.Nx,
dtype=np.float64)
self._y_points = y1 + self.DyInMetres * np.arange(self.Ny,
dtype=np.float64)
elif gridType in ["reduced_ll", "reduced_gg"]:
self._x_points = self.longitudes
self._y_points = self.latitudes
else:
raise TranslationError("unhandled grid type")
def _regular_longitude_common(self):
"""Define a regular longitude dimension."""
i_step = self.iDirectionIncrementInDegrees
if self.iScansNegatively:
i_step = -i_step
self._x_points = (np.arange(self.Ni, dtype=np.float64) * i_step +
self.longitudeOfFirstGridPointInDegrees)
if "longitude" in self.extra_keys['_x_coord_name'] and self.Ni > 1:
if _longitude_is_cyclic(self._x_points):
self.extra_keys['_x_circular'] = True
def _get_processing_done(self):
"""Determine the type of processing that was done on the data."""
processingDone = 'unknown'
timeRangeIndicator = self.timeRangeIndicator
default = 'time _grib1_process_unknown_%i' % timeRangeIndicator
processingDone = TIME_RANGE_INDICATORS.get(timeRangeIndicator, default)
return processingDone
def _get_verification_date(self):
reference_date_time = self._referenceDateTime
# calculate start time
time_range_indicator = self.timeRangeIndicator
P1 = self.P1
P2 = self.P2
if time_range_indicator == 0:
# Forecast product valid at reference time + P1 P1>0),
# or Uninitialized analysis product for reference time (P1=0).
# Or Image product for reference time (P1=0)
time_diff = P1
elif time_range_indicator == 1:
# Initialized analysis product for reference time (P1=0).
time_diff = P1
elif time_range_indicator == 2:
# Product with a valid time ranging between reference time + P1
# and reference time + P2
time_diff = (P1 + P2) * 0.5
elif time_range_indicator == 3:
# Average(reference time + P1 to reference time + P2)
time_diff = (P1 + P2) * 0.5
elif time_range_indicator == 4:
# Accumulation (reference time + P1 to reference time + P2)
# product considered valid at reference time + P2
time_diff = P2
elif time_range_indicator == 5:
# Difference(reference time + P2 minus reference time + P1)
# product considered valid at reference time + P2
time_diff = P2
elif time_range_indicator == 10:
# P1 occupies octets 19 and 20; product valid at
# reference time + P1
time_diff = P1 * 256 + P2
elif time_range_indicator == 51:
# Climatological Mean Value: multiple year averages of
# quantities which are themselves means over some period of
# time (P2) less than a year. The reference time (R) indicates
# the date and time of the start of a period of time, given by
# R to R + P2, over which a mean is formed; N indicates the number
# of such period-means that are averaged together to form the
# climatological value, assuming that the N period-mean fields
# are separated by one year. The reference time indicates the
# start of the N-year climatology. N is given in octets 22-23
# of the PDS. If P1 = 0 then the data averaged in the basic
# interval P2 are assumed to be continuous, i.e., all available
# data are simply averaged together. If P1 = 1 (the units of
# time - octet 18, code table 4 - are not relevant here) then
# the data averaged together in the basic interval P2 are valid
# only at the time (hour, minute) given in the reference time,
# for all the days included in the P2 period. The units of P2
# are given by the contents of octet 18 and Table 4.
raise TranslationError("unhandled grib1 timeRangeIndicator "
"= 51 (avg of avgs)")
elif time_range_indicator == 113:
# Average of N forecasts (or initialized analyses); each
# product has forecast period of P1 (P1=0 for initialized
# analyses); products have reference times at intervals of P2,
# beginning at the given reference time.
time_diff = P1
elif time_range_indicator == 114:
# Accumulation of N forecasts (or initialized analyses); each
# product has forecast period of P1 (P1=0 for initialized
# analyses); products have reference times at intervals of P2,
# beginning at the given reference time.
time_diff = P1
elif time_range_indicator == 115:
# Average of N forecasts, all with the same reference time;
# the first has a forecast period of P1, the remaining
# forecasts follow at intervals of P2.
time_diff = P1
elif time_range_indicator == 116:
# Accumulation of N forecasts, all with the same reference
# time; the first has a forecast period of P1, the remaining
# follow at intervals of P2.
time_diff = P1
elif time_range_indicator == 117:
# Average of N forecasts, the first has a period of P1, the
# subsequent ones have forecast periods reduced from the
# previous one by an interval of P2; the reference time for
# the first is given in octets 13-17, the subsequent ones
# have reference times increased from the previous one by
# an interval of P2. Thus all the forecasts have the same
# valid time, given by the initial reference time + P1.
time_diff = P1
elif time_range_indicator == 118:
# Temporal variance, or covariance, of N initialized analyses;
# each product has forecast period P1=0; products have
# reference times at intervals of P2, beginning at the given
# reference time.
time_diff = P1
elif time_range_indicator == 123:
# Average of N uninitialized analyses, starting at the
# reference time, at intervals of P2.
time_diff = P1
elif time_range_indicator == 124:
# Accumulation of N uninitialized analyses, starting at
# the reference time, at intervals of P2.
time_diff = P1
else:
raise TranslationError("unhandled grib1 timeRangeIndicator "
"= %i" % time_range_indicator)
# Get the timeunit interval.
interval_secs = self._timeunit_seconds()
# Multiply by start-offset and convert to a timedelta.
# NOTE: a 'float' conversion is required here, as time_diff may be
# a numpy scalar, which timedelta will not accept.
interval_delta = datetime.timedelta(
seconds=float(time_diff * interval_secs))
# Return validity_time = (reference_time + start_offset*time_unit).
return reference_date_time + interval_delta
@property
def bmdi(self):
# Not sure of any cases where GRIB provides a fill value.
# Default for fill value is None.
return None
def core_data(self):
try:
data = self._data
except AttributeError:
data = self.data
return data
def phenomenon_points(self, time_unit):
"""
Return the phenomenon time point offset from the epoch time reference
measured in the appropriate time units.
"""
time_reference = '%s since epoch' % time_unit
return float(
cf_units.date2num(
self._phenomenonDateTime, time_reference,
cf_units.CALENDAR_GREGORIAN
)
)
def phenomenon_bounds(self, time_unit):
"""
Return the phenomenon time bound offsets from the epoch time reference
measured in the appropriate time units.
"""
# TODO #576 Investigate when it's valid to get phenomenon_bounds
time_reference = '%s since epoch' % time_unit
unit = cf_units.Unit(time_reference, cf_units.CALENDAR_GREGORIAN)
return [float(unit.date2num(self._periodStartDateTime)),
float(unit.date2num(self._periodEndDateTime))]
def _longitude_is_cyclic(points):
"""Work out if a set of longitude points is cyclic."""
# Is the gap from end to start smaller, or about equal to the max step?
gap = 360.0 - abs(points[-1] - points[0])
max_step = abs(np.diff(points)).max()
cyclic = False
if gap <= max_step:
cyclic = True
else:
delta = 0.001
if abs(1.0 - gap / max_step) < delta:
cyclic = True
return cyclic
def _message_values(grib_message, shape):
gribapi.grib_set_double(grib_message, 'missingValue', np.nan)
data = gribapi.grib_get_double_array(grib_message, 'values')
data = data.reshape(shape)
# Handle missing values in a sensible way.
mask = np.isnan(data)
if mask.any():
data = ma.array(data, mask=mask, fill_value=np.nan)
return data
def _load_generate(filename):
messages = GribMessage.messages_from_filename(filename)
for message in messages:
editionNumber = message.sections[0]['editionNumber']
if editionNumber == 1:
message_id = message._raw_message._message_id
grib_fh = message._file_ref.open_file
message = GribWrapper(message_id, grib_fh=grib_fh)
elif editionNumber != 2:
emsg = 'GRIB edition {} is not supported by {!r}.'
raise TranslationError(emsg.format(editionNumber,
type(message).__name__))
yield message
def load_cubes(filenames, callback=None):
"""
Returns a generator of cubes from the given list of filenames.
Args:
* filenames:
One or more GRIB filenames to load from.
Kwargs:
* callback:
Function which can be passed on to :func:`iris.io.run_callback`.
Returns:
A generator containing Iris cubes loaded from the GRIB files.
"""
import iris.fileformats.rules as iris_rules
grib_loader = iris_rules.Loader(_load_generate,
{},
load_convert)
return iris_rules.load_cubes(filenames, callback, grib_loader)
def load_pairs_from_fields(grib_messages):
"""
Convert an iterable of GRIB messages into an iterable of
(Cube, Grib message) tuples.
This capability can be used to filter out fields before they are passed to
the load pipeline, and amend the cubes once they are created, using
GRIB metadata conditions. Where the filtering
removes a significant number of fields, the speed up to load can be
significant:
>>> import iris
>>> from iris_grib import load_pairs_from_fields
>>> from iris_grib.message import GribMessage
>>> filename = iris.sample_data_path('polar_stereo.grib2')
>>> filtered_messages = []
>>> for message in GribMessage.messages_from_filename(filename):
... if message.sections[1]['productionStatusOfProcessedData'] == 0:
... filtered_messages.append(message)
>>> cubes_messages = load_pairs_from_fields(filtered_messages)
>>> for cube, msg in cubes_messages:
... prod_stat = msg.sections[1]['productionStatusOfProcessedData']
... cube.attributes['productionStatusOfProcessedData'] = prod_stat
>>> print(cube.attributes['productionStatusOfProcessedData'])
0
This capability can also be used to alter fields before they are passed to
the load pipeline. Fields with out of specification header elements can
be cleaned up this way and cubes created:
>>> from iris_grib import load_pairs_from_fields
>>> cleaned_messages = GribMessage.messages_from_filename(filename)
>>> for message in cleaned_messages:
... if message.sections[1]['productionStatusOfProcessedData'] == 0:
... message.sections[1]['productionStatusOfProcessedData'] = 4
>>> cubes = load_pairs_from_fields(cleaned_messages)
Args:
* grib_messages:
An iterable of :class:`iris_grib.message.GribMessage`.
Returns:
An iterable of tuples of (:class:`iris.cube.Cube`,
:class:`iris_grib.message.GribMessage`).
"""
import iris.fileformats.rules as iris_rules
return iris_rules.load_pairs_from_fields(grib_messages, load_convert)
def save_grib2(cube, target, append=False):
"""
Save a cube or iterable of cubes to a GRIB2 file.
Args:
* cube:
The :class:`iris.cube.Cube`, :class:`iris.cube.CubeList` or list of
cubes to save to a GRIB2 file.
* target:
A filename or open file handle specifying the GRIB2 file to save
to.
Kwargs:
* append:
Whether to start a new file afresh or add the cube(s) to the end of
the file. Only applicable when target is a filename, not a file
handle. Default is False.
"""
messages = (message for _, message in save_pairs_from_cube(cube))
save_messages(messages, target, append=append)
def save_pairs_from_cube(cube):
"""
Convert one or more cubes to (2D cube, GRIB message) pairs.
Returns an iterable of tuples each consisting of one 2D cube and
one GRIB message ID, the result of the 2D cube being processed by the GRIB
save rules.
Args:
* cube:
A :class:`iris.cube.Cube`, :class:`iris.cube.CubeList` or
list of cubes.
"""
x_coords = cube.coords(axis='x', dim_coords=True)
y_coords = cube.coords(axis='y', dim_coords=True)
if len(x_coords) != 1 or len(y_coords) != 1:
raise TranslationError("Did not find one (and only one) x or y coord")
# Save each latlon slice2D in the cube
for slice2D in cube.slices([y_coords[0], x_coords[0]]):
grib_message = gribapi.grib_new_from_samples("GRIB2")
_save_rules.run(slice2D, grib_message, cube)
yield (slice2D, grib_message)
def save_messages(messages, target, append=False):
"""
Save messages to a GRIB2 file.
The messages will be released as part of the save.
Args:
* messages:
An iterable of grib_api message IDs.
* target:
A filename or open file handle.
Kwargs:
* append:
Whether to start a new file afresh or add the cube(s) to the end of
the file. Only applicable when target is a filename, not a file
handle. Default is False.
"""
# grib file (this bit is common to the pp and grib savers...)
if isinstance(target, str):
grib_file = open(target, "ab" if append else "wb")
elif hasattr(target, "write"):
if hasattr(target, "mode") and "b" not in target.mode:
raise ValueError("Target not binary")
grib_file = target
else:
raise ValueError("Can only save grib to filename or writable")
try:
for message in messages:
gribapi.grib_write(message, grib_file)
gribapi.grib_release(message)
finally:
# (this bit is common to the pp and grib savers...)
if isinstance(target, str):
grib_file.close()