diff --git a/.github/workflows/black.yml b/.github/workflows/black.yml new file mode 100644 index 00000000..e5a254a8 --- /dev/null +++ b/.github/workflows/black.yml @@ -0,0 +1,21 @@ +name: Black + +on: [push, pull_request] + +jobs: + black: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Install poetry + run: pipx install poetry + - name: Set up Python 3.11 + uses: actions/setup-python@v4 + with: + python-version: "3.11" + - name: Install dependencies + run: | + poetry install --with dev + - name: Reformat the code with black + run: | + poetry run black . --check \ No newline at end of file diff --git a/.github/workflows/continous_integration.yml b/.github/workflows/continous_integration.yml index f9623a56..b0f8271e 100644 --- a/.github/workflows/continous_integration.yml +++ b/.github/workflows/continous_integration.yml @@ -6,13 +6,7 @@ name: CI on: # Triggers the workflow on push or pull request events but only for the master branch push: - pull_request: - - # run the pipeline on the 0th minute of the 0th hour of day 1 and 15 every month - schedule: - - cron: '0 0 1,15 * *' - # Allows you to run this workflow manually from the Actions tab workflow_dispatch: @@ -26,7 +20,7 @@ jobs: # Specify the python versions to test strategy: matrix: - python-version: ["3.9", "3.10", "3.11"] + python-version: ["3.9", "3.10", "3.11", "3.12"] # Steps represent a sequence of tasks that will be executed as part of the job steps: @@ -59,7 +53,7 @@ jobs: run: | python -m pip install --upgrade pip python -m pip install poetry - python -m poetry install + python -m poetry install --with dev # Runs a set of commands using the runners shell - name: Test the code @@ -108,5 +102,5 @@ jobs: uses: coverallsapp/github-action@v2 with: parallel-finished: true - carryforward: "python3.9,python3.10,python3.11" + carryforward: "python3.9,python3.10,python3.11,python3.12" github-token: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml index 8d9b7262..ac6d8db4 100644 --- a/.github/workflows/lint.yml +++ b/.github/workflows/lint.yml @@ -5,13 +5,6 @@ on: pull_request: jobs: - black: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - uses: psf/black@stable - with: - version: '~=23.12' mypy: runs-on: ubuntu-latest steps: @@ -23,6 +16,6 @@ jobs: - name: Install poetry run: pip install poetry # You may need additional dependencies here - name: Install flarestack - run: poetry install + run: poetry install --with dev - name: Run mypy run: poetry run mypy # Replace 'your_code_directory' with your actual code directory diff --git a/README.md b/README.md index 3bbd92da..eee2a8d1 100644 --- a/README.md +++ b/README.md @@ -61,13 +61,13 @@ This will install all packages as documented in the `poetry.lock` file. If you want to also build the documentation locally, you should install the respective dependencies: ```shell -poetry install --with docs +poetry install --with dev ``` You can still use `pip` if you want to: ```shell -pip install -e flarestack/ +pip install -e ".[dev]" ``` Either way will give you the very latest copy of the code, update the installed version if you git pull or modify scripts diff --git a/conda_env.yml b/conda_env.yml index 7eff44ac..947d3579 100644 --- a/conda_env.yml +++ b/conda_env.yml @@ -3,4 +3,4 @@ channels: - conda-forge - defaults dependencies: - - photospline=2.1.0 \ No newline at end of file + - photospline=2.3.1 \ No newline at end of file diff --git a/flarestack/core/spatial_pdf.py b/flarestack/core/spatial_pdf.py index d07715fe..1ffcf67f 100644 --- a/flarestack/core/spatial_pdf.py +++ b/flarestack/core/spatial_pdf.py @@ -1,15 +1,21 @@ -import numpy as np -import healpy as hp -import os import logging +import os from typing import Optional -from scipy.stats import norm -from scipy.interpolate import interp1d + +import healpy as hp +import numpy as np from numpy.lib.recfunctions import append_fields +from scipy.interpolate import interp1d +from scipy.stats import norm + from flarestack.core.astro import angular_distance from flarestack.shared import bkg_spline_path from flarestack.utils.make_SoB_splines import load_bkg_spatial_spline -from photospline import SplineTable + +try: + from photospline import SplineTable +except ImportError: + SplineTable = None logger = logging.getLogger(__name__) @@ -229,6 +235,12 @@ def __init__(self, spatial_pdf_dict): ) KDEfile = spatial_pdf_dict["spatial_pdf_data"] + if SplineTable is None: + logger.error("Photospline is not installed, cannot use KDE spatial PDF") + raise ImportError( + "Photospline is not installed, cannot use KDE spatial PDF" + ) + NorthernTracksKDE.KDEspline = SplineTable(KDEfile) if NorthernTracksKDE.KDEspline.ndim == 3: NorthernTracksKDE.SplineIs4D = False diff --git a/poetry.lock b/poetry.lock index 53dc1781..0b94d729 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand. [[package]] name = "alabaster" @@ -6,6 +6,7 @@ version = "0.7.16" description = "A light, configurable Sphinx theme" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, @@ -13,25 +14,26 @@ files = [ [[package]] name = "anyio" -version = "4.4.0" +version = "4.8.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" +groups = ["main"] files = [ - {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"}, - {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"}, + {file = 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library" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "astropy-6.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2b5ff962b0e586953f95b63ec047e1d7a3b6a12a13d11c6e909e0bcd3e05b445"}, {file = "astropy-6.0.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:129ed1fb1d23e6fbf8b8e697c2e7340d99bc6271b8c59f9572f3f47063a42e6a"}, @@ -174,13 +182,14 @@ test-all = ["astropy[test]", "coverage[toml]", "ipython (>=4.2)", "objgraph", "s [[package]] name = "astropy-iers-data" -version = "0.2024.7.29.0.32.7" +version = "0.2025.1.20.0.32.27" description = "IERS Earth Rotation and Leap Second tables for the astropy core package" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ - {file = "astropy_iers_data-0.2024.7.29.0.32.7-py3-none-any.whl", hash = "sha256:7c8fb523731f6c2c039c112be089c998202020234d2a6155a1f3620b4cfbf24d"}, - {file = "astropy_iers_data-0.2024.7.29.0.32.7.tar.gz", hash = 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