diff --git a/pyproject.toml b/pyproject.toml
index e396d8d1c65..d572ac3ee76 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -14,3 +14,13 @@ line-length = 119
 [tool.ruff.isort]
 lines-after-imports = 2
 known-first-party = ["datasets"]
+
+[tool.pytest.ini_options]
+# Test fails if a FutureWarning is thrown by `huggingface_hub`
+filterwarnings = [
+    "error::FutureWarning:huggingface_hub*",
+]
+markers = [
+    "unit: unit test",
+    "integration: integration test",
+]
diff --git a/setup.cfg b/setup.cfg
deleted file mode 100644
index c64d667239e..00000000000
--- a/setup.cfg
+++ /dev/null
@@ -1,10 +0,0 @@
-[metadata]
-license_files = LICENSE
-
-[tool:pytest]
-# Test fails if a FutureWarning is thrown by `huggingface_hub`
-filterwarnings =
-    error::FutureWarning:huggingface_hub*
-markers =
-    unit: unit test
-    integration: integration test
diff --git a/src/datasets/__init__.py b/src/datasets/__init__.py
index 59f2cbdc50f..1eaf4a06b50 100644
--- a/src/datasets/__init__.py
+++ b/src/datasets/__init__.py
@@ -1,4 +1,4 @@
-# flake8: noqa
+# ruff: noqa
 # Copyright 2020 The HuggingFace Datasets Authors and the TensorFlow Datasets Authors.
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -13,10 +13,6 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-# Lint as: python3
-# pylint: enable=line-too-long
-# pylint: disable=g-import-not-at-top,g-bad-import-order,wrong-import-position
-
 __version__ = "2.16.2.dev0"
 
 from .arrow_dataset import Dataset
diff --git a/src/datasets/features/__init__.py b/src/datasets/features/__init__.py
index d8f72f31d6f..65ae879a2bb 100644
--- a/src/datasets/features/__init__.py
+++ b/src/datasets/features/__init__.py
@@ -1,4 +1,4 @@
-# flake8: noqa
+# ruff: noqa
 
 __all__ = [
     "Audio",
diff --git a/src/datasets/formatting/__init__.py b/src/datasets/formatting/__init__.py
index 5f8090e0d70..ba1edcff070 100644
--- a/src/datasets/formatting/__init__.py
+++ b/src/datasets/formatting/__init__.py
@@ -12,8 +12,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-# flake8: noqa
-# Lint as: python3
+# ruff: noqa
 
 from typing import Dict, List, Optional, Type
 
diff --git a/src/datasets/utils/__init__.py b/src/datasets/utils/__init__.py
index 001fca727b3..5df74ff8cac 100644
--- a/src/datasets/utils/__init__.py
+++ b/src/datasets/utils/__init__.py
@@ -12,8 +12,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-# flake8: noqa
-# Lint as: python3
+# ruff: noqa
 
 from . import tqdm as _tqdm  # _tqdm is the module
 from .info_utils import VerificationMode