diff --git a/doc/source/releases/25.1_announce.rst b/doc/source/releases/25.1_announce.rst index 540f7dd83e91..714ec761e5d2 100644 --- a/doc/source/releases/25.1_announce.rst +++ b/doc/source/releases/25.1_announce.rst @@ -1,6 +1,118 @@ -:orphan: +=========================================================== +25.1 Galaxy Release (December 2025) +=========================================================== + +.. include:: _header.rst + +Please see the `25.1 user release notes <25.1_announce_user.html>`__ for a summary of new user features. +The `GitHub Release Notes `__ provide a comprehensive overview of all changes. + +Get Galaxy +=========================================================== + +The code lives at `GitHub `__ and you should have `Git `__ to obtain it. + +To get a new Galaxy repository run: + .. code-block:: shell + + $ git clone -b release_25.1 https://github.com/galaxyproject/galaxy.git + +To update an existing Galaxy repository run: + .. code-block:: shell + + $ git fetch origin && git checkout release_25.1 && git pull --ff-only origin release_25.1 + +See the `community hub `__ for additional details on source code locations. + + +Admin Notes +=========================================================== + +**Database Migrations will require stopping the Galaxy instance** + This release includes database migrations that require the Galaxy instance to be stopped + before applying the update. Please plan accordingly to minimize downtime for users. + +Configuration Changes +=========================================================== + + +Added +----- + +The following configuration options are new +config/galaxy.yml.sample:galaxy +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +- mapping.tool_shed.mapping.allow_local_account_creation + + +Removed +------- + +The following configuration options have been completely removed + +config/galaxy.yml.sample:galaxy +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +- mapping.tool_shed.mapping.allow_user_creation + + +Deprecation Notices =========================================================== -25.1 Galaxy Release + +**Deprecation of the Trackster Visualization in Galaxy release 26.0** + The legacy Trackster genome browser visualization has been deprecated and + `will be completely removed in Galaxy 26.0 `__. This includes + the removal of special handling for Trackster across tool execution, toolbox filtering, visualization + framework features, controller endpoints, client code, and other conditional logic. With the removal of + Trackster, the era of Mako-based visualizations served from controller endpoints ends. + Galaxy now provides the modern IGV (Integrative Genomics Viewer) as the primary genome browser + visualization, offering superior functionality and performance for genomic data exploration. + +**Deprecation of Mako-based visualizations in Galaxy release 26.0** + With the removal of Trackster in 26.0, the remaining legacy Mako-based visualization framework + and controller endpoints are deprecated and + `will be completely removed in Galaxy 26.0 `__. + Any remaining Mako-based visualizations should be migrated to the modern script-based visualization + plugin framework. Users and administrators are encouraged to transition to supported visualization + plugins to ensure continued functionality and access to new features. + +**Deprecation of the Galaxy Reports application in Galaxy release 26.0** + The standalone Galaxy Reports application, which provides administrative usage statistics and + analytics for Galaxy instances, is deprecated and will be removed in Galaxy 26.0. + The Reports app was a separate web application that connected to the Galaxy database to display + information about jobs, workflows, users, and system usage. Administrators currently using the + Reports app should plan to migrate to alternative monitoring and analytics solutions before + Galaxy 26.0 is released next year. The following GTN tutorials provide guidance on alternative + monitoring approaches: + + * `Galaxy Monitoring with Telegraf and Grafana `__ + * `Galaxy Monitoring with gxadmin `__ + +Release Team =========================================================== + +Release manager: `Ahmed Awan `__, `Aysam Guerler `__ + +Release testing: + +* `Tyler Collins `__ +* `Arash Kadkhodaei `__ +* `John Chilton `__ +* `Keith Suderman `__ +* `Aysam Guerler `__ +* `Alireza Heidari `__ +* `Jennifer Hillman-Jackson `__ + +Communications: + +* `Natalie Whitaker-Allen `__ +* `Scott Cain `__ + +A special thank you goes to everyone who helped test the new release after its deployment on usegalaxy.org. + +---- + +.. include:: _thanks.rst diff --git a/doc/source/releases/25.1_announce_user.rst b/doc/source/releases/25.1_announce_user.rst new file mode 100644 index 000000000000..fec3e5865e0d --- /dev/null +++ b/doc/source/releases/25.1_announce_user.rst @@ -0,0 +1,456 @@ + +=========================================================== +25.1 Galaxy Release (October 2025) +=========================================================== + +.. include:: _header.rst + +Please see the full `release notes `__ for more details. + +Highlights +=========================================================== + +Discover some of the exciting new features, enhancements, and improvements in Galaxy 25.1. + +A Fresh, Modern History List Interface +-------------------------------------- + +Galaxy 25.1 introduces a redesigned history list that makes managing your histories more intuitive and +visually appealing. + +- **Card-based design**. Histories are now displayed as clean, modern cards that provide better visual + organization in a grid vs list view, as you prefer. +- **Enhanced information display**. Each history card shows key details at a glance, including + creation date, size, update time, and status indicators in a more structured layout. +- **Improved responsive design**. The new interface adapts better to different screen sizes and + provides a more consistent experience across devices. +- **Advanced keyboard navigation and selection**. Navigate through histories using arrow keys, + select multiple histories with Shift+click for range selection, and use keyboard shortcuts + for efficient bulk operations — available across multiple Galaxy list interfaces. + +This update modernizes one of Galaxy's core interfaces, providing a cleaner and more user-friendly +way to navigate your analysis history collection while adding powerful selection capabilities. +[`#20744 `__] + +.. raw:: html + + + +Smart Sample Sheets for Complex Workflow Inputs +----------------------------------------------- + +Galaxy now supports **Sample Sheets** to simplify complex workflow inputs and data organization. This +feature allows you to import data from external spreadsheets (CSV, TSV, or Excel) and use them to +configure workflow parameters and organize datasets. + +- **Spreadsheet-style data entry**. Define your experimental data using familiar spreadsheet interfaces + with customizable columns for sample names, treatments, conditions, and file locations — whether + datasets or remote URLs. +- **Workflow author-defined templates**. Workflow creators can pre-configure sample sheet templates + with specific columns, validation rules, and helpful descriptions, guiding users through proper data + organization. +- **Built into the Apply Rules tool**. Advanced users can leverage sample sheet data within the Apply + Rules tool for sophisticated data manipulation and collection operations. +- **Integration within the Workflow Editor**. Configure workflows to accept sample sheet inputs + directly from the Workflow Editor. + +Sample Sheets are particularly useful for workflows that require multiple related inputs or when you +need to process batches of samples with associated metadata in a structured format. +[`#19305 `__] + +.. raw:: html + + + +An Enhanced Tool Discovery View +------------------------------- + +Galaxy 25.1 introduces a redesigned **Tool Discovery View** that replaces the previous advanced tool +search with a more powerful and intuitive tool exploration interface. + +- **Dedicated Discovery Interface**. Advanced tool search has moved from the tool panel to a rich, + dedicated center-panel view optimized for finding the right tools for your analysis. +- **Card-based Tool Display**. Tools are presented as visually appealing cards with key information, + including EDAM ontology tags, descriptions, and links. +- **Tool Favorites and Sharing**. Easily add tools to your favorites for quick access, and share useful + tools with colleagues via the copyable link feature. +- **EDAM Ontology Integration**. Browse and filter tools by EDAM (EMBRACE Data and Methods) ontologies + to discover tools based on scientific domains and data types. + +This new interface makes tool discovery more efficient and helps users find the most appropriate tools +for their specific analysis needs. +[`#20747 `__] + +.. raw:: html + + + +New Galaxy Charts Visualization Framework +----------------------------------------- + +This release also introduces the **Galaxy Charts** framework, bringing enhanced visualizations and a +more powerful visualization experience to Galaxy users. + +- **Improved Visualization Performance**. Enjoy faster loading times, smoother interactions, and more + responsive visualizations built with modern web technologies for a better user experience. +- **Enhanced IGV.js Genome Browser**. Galaxy now includes a complete IGV.js (Integrative Genome Browser) + integration for comprehensive genomic data visualization with multi-track support for BAM, VCF, + BigWig, BED, GFF, GTF, and CRAM files. +- **Automatic Data Integration**. Visualizations now automatically connect to your Galaxy datasets and + match reference genomes, eliminating manual configuration steps and making it easier to explore your + data. +- **Expanded Visualization Library**. The new framework enables rapid deployment of cutting-edge + visualizations, meaning Galaxy users will see more powerful visualization options in future releases. + +*See the Admin Notes and Deprecation Notices sections* :doc:`here <25.1_announce>` *for more details on +the visualization framework and the removal of Trackster.* + +**Featured Implementation: IGV.js Genome Browser** + +Galaxy 25.1 ships with a complete IGV.js (Integrative Genome Browser) implementation built on the +Galaxy Charts framework, showcasing the platform's capabilities: + +- **Multi-track Genomic Visualization**. View multiple tracks in various formats including BAM, VCF, + BigWig, BED, GFF, GTF, and CRAM files with full support for indexed data and byte-range requests. +- **Automatic Genome Matching**. Automatically matches dataset database keys against available genomes, + supporting both IGV-provided reference genomes and Galaxy-served genomes in 2bit and FASTA formats. +- **Interactive Exploration**. Full IGV.js functionality including zooming, panning, dynamic track + configuration, and multi-sample comparisons for comprehensive genomic data analysis. + +The Galaxy Charts framework represents a major advancement in Galaxy's visualization capabilities, +making it easier than ever to create sophisticated, interactive visualizations while maintaining full +integration with Galaxy's data management and analysis ecosystem. Here's a look at the IGV.js addition: +[`#20943 `__] + +.. raw:: html + + + +A Place to Find your Recent Downloads in Galaxy +----------------------------------------------- + +Galaxy 25.1 introduces a dedicated "Recent Exports & Downloads" page that lists your recent +exports/downloads. + +- **Re-download available items**. Easily access and download files still available in the short-term + storage cache. +- **Navigate to source objects**. Jump directly to the details page of the originating item (e.g. + workflow invocation, history, etc.). + +This improves the discoverability and accessibility of recent downloads without needing to track links +manually. +[`#20585 `__] + +.. raw:: html + + + +Visual Indicators for Short-Term Storage Expiration +--------------------------------------------------- + +Galaxy 25.1 introduces visual expiration indicators that help users identify when datasets and +collections are stored in temporary or short-term storage that will be automatically cleaned up. + +- **Expiration warnings in history**. Datasets and collections now display countdown timers showing + when they will expire, helping users plan data management and downloads before automatic cleanup. +- **Collection-aware indicators**. Smart detection across dataset collections shows the earliest + expiration time when collections contain datasets from mixed storage types. +- **Admin-configurable expiration periods**. Administrators can set `object_expires_after_days` in + object store configurations to match their actual cleanup schedules and inform users appropriately. + +*Note that Galaxy instance administrators must set `object_expires_after_days` in their object store +configurations for these indicators to function correctly.* + +This feature is particularly valuable for instances using scratch storage or temporary +high-performance storage tiers, as it gives users clear visibility into data lifecycle and helps +prevent unexpected data loss due to automatic cleanup processes. +[`#20332 `__] + +.. raw:: html + + + +Galaxy Tools Now Handle Secrets and Authentication +-------------------------------------------------- + +Galaxy 25.1 implements a comprehensive tool credentials system, allowing tools to securely access +external services by defining authentication credentials (variables and secrets) in tool requirements +while keeping sensitive information separate from tool definitions. + +- **Credential Definition in Tools**. Tools can define credential requirements using `` + elements within `` with support for both variables (non-sensitive config like URLs, + usernames) and secrets (sensitive data like passwords, API keys). +- **Secure Storage & Management**. Integration with Galaxy's vault system provides secure secret + storage with user-specific credential isolation by tool and service, plus credential groups for + organizing multiple credential sets. +- **REST API**. Complete CRUD operations enable credential management with user credential listing, + group-based credential organization, and secure deletion with vault cleanup. +- **Frontend Integration**. Unified credential management UI appears for every tool with workflow-level + credential status display, multi-tool credential coordination, and real-time credential validation + and feedback. +- **Tool Execution Integration**. Automatic credential injection as environment variables with job + context tracking for credential usage, supporting tool proxies and various tool types while + maintaining backward compatibility. + +This system provides secure credential management for tools that need to access external APIs, +databases, or cloud services, ensuring sensitive authentication information is properly protected +while making it easy for users to configure and manage their credentials across different tools and +workflows. +[`#19084 `__] + +.. raw:: html + + + +Search for Steps, Tools and Subworkflows within the Workflow Editor +------------------------------------------------------------------- + +As with many improvements to the Workflow Editor in recent releases, Galaxy 25.1 adds the ability to +search for several properties of all elements in the workflow graph, displays the search results in a +list, and highlights them when clicked. +[`#20390 `__] + +.. raw:: html + + + +A Redesign of your User Preferences +----------------------------------- + +The User Preferences interface has been redesigned to enhance user experience through improved +navigation and a modernised interface. +[`#19658 `__] + +.. raw:: html + + + +---- + +Visualizations Updates +=========================================================== + +.. visualizations +* [igv] Allow selection of genomes from history fasta/2bit + (thanks to `@guerler `__). + `Pull Request 21269`_ +* Add Hyphy Vision Result Viewer + (thanks to `@guerler `__). + `Pull Request 21196`_ +* Enable drag-and-drop of collection elements in IGV + (thanks to `@guerler `__). + `Pull Request 21173`_ +* Update Javascript package licenses to MIT + (thanks to `@mr-c `__). + `Pull Request 20264`_ +* Install Visualization plugins as self-contained packages + (thanks to `@guerler `__). + `Pull Request 20348`_ +* Restore Nora + (thanks to `@guerler `__). + `Pull Request 20387`_ +* Install visualizations directly to static path, avoid duplication + (thanks to `@guerler `__). + `Pull Request 20372`_ +* Add rerun.io web viewer + (thanks to `@guerler `__). + `Pull Request 20202`_ +* Update tiffviewer visualization to version 0.0.3 + (thanks to `@davelopez `__). + `Pull Request 20658`_ +* Consolidate visualization mako, avoid user agent styles + (thanks to `@guerler `__). + `Pull Request 20760`_ +* Enable data label column selection in basic Plotly plots and add heatmap + (thanks to `@guerler `__). + `Pull Request 20813`_ +* Update JupyterLite version to 0.6.4 + (thanks to `@guerler `__). + `Pull Request 20877`_ +* Add Multiple Sequence Alignment Viewer 2.0 + (thanks to `@guerler `__). + `Pull Request 20907`_ +* Make jupyterlite default visualization for ipynb + (thanks to `@guerler `__). + `Pull Request 20931`_ +* Fix JupyterLite History Identifier Retrieval Without Dataset + (thanks to `@guerler `__). + `Pull Request 20971`_ +* Save IGV locus and improve error handling + (thanks to `@guerler `__). + `Pull Request 20996`_ +* Bump vitessce to 3.8.2 + (thanks to `@guerler `__). + `Pull Request 21003`_ +* Fix and migrate HIV-TRACE to Charts Visualization Framework + (thanks to `@guerler `__). + `Pull Request 21006`_ +* Add README and update the minimal visualization example + (thanks to `@guerler `__). + `Pull Request 21007`_ +* Allow creation of visualizations without dataset + (thanks to `@guerler `__). + `Pull Request 20914`_ +* Adds IGV.js Visualization + (thanks to `@guerler `__). + `Pull Request 20943`_ + +Datatypes Updates +=========================================================== + +.. datatypes +* New datatype addition: HAL + (thanks to `@SaimMomin12 `__). + `Pull Request 21379`_ +* Add PNTS datatype for 3D Tiles Point Cloud + (thanks to `@kgerb `__). + `Pull Request 21414`_ +* Backport fix anndata datatype update + (thanks to `@nilchia `__). + `Pull Request 21111`_ +* Fix MIME type for LAZ datatype + (thanks to `@kysrpex `__). + `Pull Request 21202`_ +* Add SpatialData datatype + (thanks to `@nilchia `__). + `Pull Request 21000`_ +* support ZARR v3 for Spatialdata dt + (thanks to `@nilchia `__). + `Pull Request 21265`_ +* Fix forward merge + (thanks to `@mvdbeek `__). + `Pull Request 21307`_ +* Fix tool-provided metadata for CONVERTER_tar_to_directory + (thanks to `@mr-c `__). + `Pull Request 20260`_ +* Pin isa-rwval 0.10.11, drop conditional import handling + (thanks to `@natefoo `__). + `Pull Request 20527`_ +* Remove ``num_unique_values`` tiff metadata element + (thanks to `@mvdbeek `__). + `Pull Request 20464`_ +* Add LocusZoom Visualization + (thanks to `@elmedjadjirayane `__). + `Pull Request 20354`_ +* Add mzMLb and MBI datatypes + (thanks to `@chambm `__). + `Pull Request 20632`_ +* Pairtool updated format and sniffers + (thanks to `@Smeds `__). + `Pull Request 20634`_ +* Add `num_unique_values` tiff metadata element, fixed + (thanks to `@kostrykin `__). + `Pull Request 20669`_ +* add fasta.bz2 as auto_compressed type + (thanks to `@bernt-matthias `__). + `Pull Request 20496`_ +* Add support for M4A audio files + (thanks to `@arash77 `__). + `Pull Request 20667`_ +* Add datatype for LexicMap index + (thanks to `@Smeds `__). + `Pull Request 20586`_ +* Bump requirement of directory converters + (thanks to `@bernt-matthias `__). + `Pull Request 20834`_ +* Undo accidental push + (thanks to `@bernt-matthias `__). + `Pull Request 20854`_ +* Fix Ipynb datatype sniffer and add unit tests + (thanks to `@ksuderman `__). + `Pull Request 20811`_ +* Add axt and maf to auto_compressed_types + (thanks to `@richard-burhans `__). + `Pull Request 20875`_ +* Add HiC datatype + (thanks to `@abretaud `__). + `Pull Request 20874`_ +* Fix DOCX detection and add PPTX support + (thanks to `@arash77 `__). + `Pull Request 20827`_ +* Fix anndata metadata + (thanks to `@nilchia `__). + `Pull Request 20778`_ +* Use a streaming based parser (ijson) when setting metadata for biom1 files + (thanks to `@ksuderman `__). + `Pull Request 20851`_ +* Add support for picking ``from_work_dir`` directory + (thanks to `@mvdbeek `__). + `Pull Request 20916`_ +* Skip sam metadata if we have too many references + (thanks to `@mvdbeek `__). + `Pull Request 20820`_ +* Extract: do not use common prefix dir + (thanks to `@bernt-matthias `__). + `Pull Request 20929`_ +* Add Auspice JSON datatype + (thanks to `@pvanheus `__). + `Pull Request 20466`_ +* Clean up code from pyupgrade + (thanks to `@nsoranzo `__). + `Pull Request 20642`_ +* Add safetensors datatype + (thanks to `@nilchia `__). + `Pull Request 20754`_ +* Add freq.json datatype subclass + (thanks to `@guerler `__). + `Pull Request 21012`_ +* Merge 25.0 into dev + (thanks to `@guerler `__). + `Pull Request 21018`_ +* New datatype addition: beast.trees datatype + (thanks to `@SaimMomin12 `__). + `Pull Request 21055`_ +* New datatype addition: gam for vg toolkit + (thanks to `@SaimMomin12 `__). + `Pull Request 21096`_ +* Prefix download link + (thanks to `@martenson `__). + `Pull Request 21112`_ +* Add LAS and LAZ file format + (thanks to `@bgruening `__). + `Pull Request 21049`_ +* Add display_in_upload to LAZ and LAS + (thanks to `@bgruening `__). + `Pull Request 21060`_ +* Type annotation fixes for mypy 1.16.0 + (thanks to `@nsoranzo `__). + `Pull Request 20424`_ + +Builtin Tool Updates +=========================================================== + +.. tools +* Set minimum profile version for expression tools + (thanks to `@mvdbeek `__). + `Pull Request 21151`_ +* Drop ucsc test server from sample build sites + (thanks to `@mvdbeek `__). + `Pull Request 20723`_ +* Drop Python helper script from sort1 tool + (thanks to `@nsoranzo `__). + `Pull Request 20876`_ +* Update requirements of sort1 tool + (thanks to `@nsoranzo `__). + `Pull Request 20892`_ +* Update maf tools with profiles, required_files, and requirements + (thanks to `@natefoo `__). + `Pull Request 20865`_ +* Modernize tools in the filters/ dir + (thanks to `@natefoo `__). + `Pull Request 20840`_ +* Add special case for BAM files in RStudio + (thanks to `@bgruening `__). + `Pull Request 20692`_ +* Fix comp1 / test_subworkflow_map_over_data_column + (thanks to `@mvdbeek `__). + `Pull Request 20992`_ + +Please see the full `release notes `__ for more details. +The admin-facing release notes are available :doc:`here <25.1_announce>`. + +.. include:: 25.1_prs.rst + +---- + +.. include:: _thanks.rst diff --git a/doc/source/releases/25.1_prs.rst b/doc/source/releases/25.1_prs.rst new file mode 100644 index 000000000000..208f4e0baaaf --- /dev/null +++ b/doc/source/releases/25.1_prs.rst @@ -0,0 +1,445 @@ + +.. github_links +.. _Pull Request 21442: https://github.com/galaxyproject/galaxy/pull/21442 +.. _Pull Request 21435: https://github.com/galaxyproject/galaxy/pull/21435 +.. _Pull Request 21342: https://github.com/galaxyproject/galaxy/pull/21342 +.. _Pull Request 21269: https://github.com/galaxyproject/galaxy/pull/21269 +.. _Pull Request 21346: https://github.com/galaxyproject/galaxy/pull/21346 +.. _Pull Request 21349: https://github.com/galaxyproject/galaxy/pull/21349 +.. _Pull Request 21350: https://github.com/galaxyproject/galaxy/pull/21350 +.. _Pull Request 21379: https://github.com/galaxyproject/galaxy/pull/21379 +.. _Pull Request 21276: https://github.com/galaxyproject/galaxy/pull/21276 +.. _Pull Request 21360: https://github.com/galaxyproject/galaxy/pull/21360 +.. _Pull Request 21377: https://github.com/galaxyproject/galaxy/pull/21377 +.. _Pull Request 21414: https://github.com/galaxyproject/galaxy/pull/21414 +.. _Pull Request 21419: https://github.com/galaxyproject/galaxy/pull/21419 +.. _Pull Request 21426: https://github.com/galaxyproject/galaxy/pull/21426 +.. _Pull Request 21428: https://github.com/galaxyproject/galaxy/pull/21428 +.. _Pull Request 21191: https://github.com/galaxyproject/galaxy/pull/21191 +.. _Pull Request 21193: https://github.com/galaxyproject/galaxy/pull/21193 +.. _Pull Request 21196: https://github.com/galaxyproject/galaxy/pull/21196 +.. _Pull Request 21195: https://github.com/galaxyproject/galaxy/pull/21195 +.. _Pull Request 21111: https://github.com/galaxyproject/galaxy/pull/21111 +.. _Pull Request 21202: https://github.com/galaxyproject/galaxy/pull/21202 +.. _Pull Request 21197: https://github.com/galaxyproject/galaxy/pull/21197 +.. _Pull Request 21192: https://github.com/galaxyproject/galaxy/pull/21192 +.. _Pull Request 21214: https://github.com/galaxyproject/galaxy/pull/21214 +.. _Pull Request 21203: https://github.com/galaxyproject/galaxy/pull/21203 +.. _Pull Request 21210: https://github.com/galaxyproject/galaxy/pull/21210 +.. _Pull Request 21212: https://github.com/galaxyproject/galaxy/pull/21212 +.. _Pull Request 21023: https://github.com/galaxyproject/galaxy/pull/21023 +.. _Pull Request 21223: https://github.com/galaxyproject/galaxy/pull/21223 +.. _Pull Request 21233: https://github.com/galaxyproject/galaxy/pull/21233 +.. _Pull Request 21213: https://github.com/galaxyproject/galaxy/pull/21213 +.. _Pull Request 21232: https://github.com/galaxyproject/galaxy/pull/21232 +.. _Pull Request 21000: https://github.com/galaxyproject/galaxy/pull/21000 +.. _Pull Request 21246: https://github.com/galaxyproject/galaxy/pull/21246 +.. _Pull Request 21240: https://github.com/galaxyproject/galaxy/pull/21240 +.. _Pull Request 21249: https://github.com/galaxyproject/galaxy/pull/21249 +.. _Pull Request 21200: https://github.com/galaxyproject/galaxy/pull/21200 +.. _Pull Request 21274: https://github.com/galaxyproject/galaxy/pull/21274 +.. _Pull Request 21265: https://github.com/galaxyproject/galaxy/pull/21265 +.. _Pull Request 21282: https://github.com/galaxyproject/galaxy/pull/21282 +.. _Pull Request 21284: https://github.com/galaxyproject/galaxy/pull/21284 +.. _Pull Request 21280: https://github.com/galaxyproject/galaxy/pull/21280 +.. _Pull Request 21293: https://github.com/galaxyproject/galaxy/pull/21293 +.. _Pull Request 21013: https://github.com/galaxyproject/galaxy/pull/21013 +.. _Pull Request 21290: https://github.com/galaxyproject/galaxy/pull/21290 +.. _Pull Request 21294: https://github.com/galaxyproject/galaxy/pull/21294 +.. _Pull Request 21314: 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+.. _Pull Request 21165: https://github.com/galaxyproject/galaxy/pull/21165 +.. _Pull Request 21164: https://github.com/galaxyproject/galaxy/pull/21164 +.. _Pull Request 21160: https://github.com/galaxyproject/galaxy/pull/21160 +.. _Pull Request 21169: https://github.com/galaxyproject/galaxy/pull/21169 +.. _Pull Request 21173: https://github.com/galaxyproject/galaxy/pull/21173 +.. _Pull Request 21085: https://github.com/galaxyproject/galaxy/pull/21085 +.. _Pull Request 21151: https://github.com/galaxyproject/galaxy/pull/21151 +.. _Pull Request 21156: https://github.com/galaxyproject/galaxy/pull/21156 +.. _Pull Request 20260: https://github.com/galaxyproject/galaxy/pull/20260 +.. _Pull Request 20268: https://github.com/galaxyproject/galaxy/pull/20268 +.. _Pull Request 20264: 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+=========================================================== +26.0 Galaxy Release +=========================================================== diff --git a/doc/source/releases/index.rst b/doc/source/releases/index.rst index 7832c65985d9..2b6908c8b39e 100644 --- a/doc/source/releases/index.rst +++ b/doc/source/releases/index.rst @@ -4,6 +4,7 @@ Releases .. toctree:: :maxdepth: 1 + 25.1_announce_user 25.0_announce_user 24.2_announce_user 24.1_announce_user