diff --git a/Changelog.md b/Changelog.md
index cca29346b..2241a802d 100644
--- a/Changelog.md
+++ b/Changelog.md
@@ -2,7 +2,7 @@
 
 ## Unreleased
 
-- Node.js: Yarn, npm, and pnpm workspace packages now appear as individual build targets (e.g. `yarn@./:my-package`, `npm@./:my-package`, `pnpm@./:my-package`), enabling per-package dependency scoping via `.fossa.yml`.
+- Node.js: Yarn, npm, pnpm, and bun workspace packages now appear as individual build targets (e.g. `yarn@./:my-package`, `npm@./:my-package`, `pnpm@./:my-package`, `bun@./:my-package`), enabling per-package dependency scoping via `.fossa.yml`.
 
 ## 3.16.0
 
diff --git a/docs/references/strategies/languages/nodejs/bun.md b/docs/references/strategies/languages/nodejs/bun.md
index ca6a4571b..76962eea1 100644
--- a/docs/references/strategies/languages/nodejs/bun.md
+++ b/docs/references/strategies/languages/nodejs/bun.md
@@ -39,6 +39,12 @@ Workspace entries are keyed by their relative path from the root, with `""`
 representing the root workspace. Each workspace declares its own
 `dependencies`, `devDependencies`, and `optionalDependencies`.
 
+Each workspace package (including the root) is exposed as an individual build
+target (e.g. `bun@./:my-app`, `bun@./:lib-utils`). When a subset of targets
+is selected via `.fossa.yml`, only those packages' dependencies are included
+in the analysis. When no filtering is applied, all targets are selected and
+all dependencies from every workspace package are included.
+
 ### Packages
 
 Package keys use a slash-delimited path for nested `node_modules`:
diff --git a/src/Strategy/Node.hs b/src/Strategy/Node.hs
index 5d4f64d23..8acf8f49a 100644
--- a/src/Strategy/Node.hs
+++ b/src/Strategy/Node.hs
@@ -10,6 +10,7 @@ module Strategy.Node (
   findWorkspaceBuildTargets,
   extractDepListsForTargets,
   resolveImporterPaths,
+  resolveBunWorkspacePaths,
 ) where
 
 import Algebra.Graph.AdjacencyMap qualified as AM
@@ -164,6 +165,7 @@ mkProject project = do
         Yarn _ _ -> findWorkspaceBuildTargets graph
         NPMLock _ _ -> findWorkspaceBuildTargets graph
         Pnpm _ _ -> findWorkspaceBuildTargets graph
+        Bun _ _ -> findWorkspaceBuildTargets graph
         _ -> ProjectWithoutTargets
   Manifest rootManifest <- fromEitherShow $ findWorkspaceRootManifest graph
   pure $
@@ -209,7 +211,7 @@ getDeps ::
 getDeps targets (Yarn yarnLockFile graph) = analyzeYarn targets yarnLockFile graph
 getDeps targets (NPMLock packageLockFile graph) = analyzeNpmLock targets packageLockFile graph
 getDeps targets (Pnpm pnpmLockFile graph) = analyzePnpmLock targets pnpmLockFile graph
-getDeps _ (Bun bunLockFile _) = analyzeBunLock bunLockFile
+getDeps targets (Bun bunLockFile graph) = analyzeBunLock targets bunLockFile graph
 getDeps _ (NPM graph) = analyzeNpm graph
 
 analyzePnpmLock :: (Has Diagnostics sig m, Has ReadFS sig m, Has Logger sig m) => FoundTargets -> Manifest -> PkgJsonGraph -> m DependencyResults
@@ -218,9 +220,10 @@ analyzePnpmLock targets (Manifest pnpmLockFile) graph = do
   result <- PnpmLock.analyze selectedImporterPaths pnpmLockFile
   pure $ DependencyResults result Complete [pnpmLockFile]
 
-analyzeBunLock :: (Has Diagnostics sig m, Has ReadFS sig m) => Manifest -> m DependencyResults
-analyzeBunLock (Manifest bunLockFile) = do
-  result <- BunLock.analyze bunLockFile
+analyzeBunLock :: (Has Diagnostics sig m, Has ReadFS sig m) => FoundTargets -> Manifest -> PkgJsonGraph -> m DependencyResults
+analyzeBunLock targets (Manifest bunLockFile) graph = do
+  let selectedWorkspacePaths = resolveBunWorkspacePaths targets graph
+  result <- BunLock.analyze selectedWorkspacePaths bunLockFile
   pure $ DependencyResults result Complete [bunLockFile]
 
 -- | Map selected build targets (package names) to pnpm importer paths
@@ -254,6 +257,33 @@ resolveImporterPaths (FoundTargets targets) graph@PkgJsonGraph{..} =
                 then "."
                 else maybe "." (toText . FP.dropTrailingPathSeparator . toFilePath) (stripProperPrefix rootDir manifestDir)
 
+-- | Like 'resolveImporterPaths' but for bun lockfiles, which use @""@
+-- for the root workspace instead of @"."@.
+resolveBunWorkspacePaths :: FoundTargets -> PkgJsonGraph -> Maybe (Set Text)
+resolveBunWorkspacePaths ProjectWithoutTargets _ = Nothing
+resolveBunWorkspacePaths (FoundTargets targets) graph@PkgJsonGraph{..} =
+  case findWorkspaceRootManifest graph of
+    Left _ -> Nothing
+    Right (Manifest rootManifest) ->
+      Just $ Set.fromList [p | (name, p) <- namePathPairs, name `Set.member` targetNames]
+      where
+        rootDir = parent rootManifest
+        targetNames = Set.map unBuildTarget (NonEmptySet.toSet targets)
+
+        namePathPairs :: [(Text, Text)]
+        namePathPairs =
+          [ (name, manifestToWorkspacePath m)
+          | (Manifest m, pj) <- Map.toList jsonLookup
+          , Just name <- [packageName pj]
+          ]
+
+        manifestToWorkspacePath :: Path Abs File -> Text
+        manifestToWorkspacePath m =
+          let manifestDir = parent m
+           in if manifestDir == rootDir
+                then ""
+                else maybe "" (toText . FP.dropTrailingPathSeparator . toFilePath) (stripProperPrefix rootDir manifestDir)
+
 analyzeNpmLock :: (Has Diagnostics sig m, Has ReadFS sig m) => FoundTargets -> Manifest -> PkgJsonGraph -> m DependencyResults
 analyzeNpmLock targets (Manifest npmLockFile) graph = do
   npmLockVersion <- detectNpmLockVersion npmLockFile
diff --git a/src/Strategy/Node/Bun/BunLock.hs b/src/Strategy/Node/Bun/BunLock.hs
index 8574c6f14..6079daa5a 100644
--- a/src/Strategy/Node/Bun/BunLock.hs
+++ b/src/Strategy/Node/Bun/BunLock.hs
@@ -29,6 +29,7 @@ import Data.Aeson (
 import Data.Foldable (for_)
 import Data.Map (Map)
 import Data.Map qualified as Map
+import Data.Set (Set)
 import Data.Set qualified as Set
 import Data.Text (Text)
 import Data.Text qualified as Text
@@ -187,13 +188,17 @@ parseResolution res
        in (name, Text.drop 1 rest)
 
 -- | Analyze a bun.lock file and produce a dependency graph.
+-- When @selectedWorkspacePaths@ is 'Nothing', all workspaces are included.
+-- When @Just paths@, only workspaces whose key is in @paths@ contribute
+-- direct dependencies.
 analyze ::
   (Has ReadFS sig m, Has Diagnostics sig m) =>
+  Maybe (Set Text) ->
   Path Abs File ->
   m (Graphing Dependency)
-analyze file = do
+analyze selectedWorkspacePaths file = do
   lockfile <- context "Parsing bun.lock" $ readContentsJsonc file
-  context "Building dependency graph" $ pure $ buildGraph lockfile
+  context "Building dependency graph" $ pure $ buildGraph selectedWorkspacePaths lockfile
 
 -- | Build a dependency graph from a parsed bun lockfile.
 --
@@ -209,9 +214,9 @@ analyze file = do
 -- Uses 'LabeledGrapher' so that vertices are environment-agnostic and
 -- environments accumulate as labels, avoiding duplicate vertices when
 -- the same package appears in both prod and dev across workspaces.
-buildGraph :: BunLockfile -> Graphing Dependency
-buildGraph lockfile = run . withLabeling vertexToDependency $ do
-  for_ allWorkspaces $ \workspace -> do
+buildGraph :: Maybe (Set Text) -> BunLockfile -> Graphing Dependency
+buildGraph selectedWorkspacePaths lockfile = run . withLabeling vertexToDependency $ do
+  for_ filteredWorkspaces $ \workspace -> do
     markDirectDeps EnvProduction workspace.wsDependencies
     markDirectDeps EnvDevelopment workspace.wsDevDependencies
     markDirectDeps EnvProduction workspace.wsOptionalDependencies
@@ -232,6 +237,11 @@ buildGraph lockfile = run . withLabeling vertexToDependency $ do
     allWorkspaces :: [BunWorkspace]
     allWorkspaces = Map.elems $ workspaces lockfile
 
+    filteredWorkspaces :: [BunWorkspace]
+    filteredWorkspaces = case selectedWorkspacePaths of
+      Nothing -> allWorkspaces
+      Just paths -> Map.elems $ Map.filterWithKey (\k _ -> k `Set.member` paths) (workspaces lockfile)
+
     devDepNames :: Set.Set PackageName
     devDepNames = Set.fromList $ concatMap (Map.keys . wsDevDependencies) allWorkspaces
 
diff --git a/test/Bun/BunLockSpec.hs b/test/Bun/BunLockSpec.hs
index ad2372050..ae176cad8 100644
--- a/test/Bun/BunLockSpec.hs
+++ b/test/Bun/BunLockSpec.hs
@@ -50,6 +50,7 @@ spec = do
   jsoncSpec jsoncPath
   dependenciesSpec depsPath
   workspacesSpec wsPath
+  workspaceFilterSpec wsPath
   bunProjectSpec bunProjectPath
   gitDepsSpec gitDepsPath
   mixedEnvsSpec mixedEnvsPath
@@ -152,6 +153,33 @@ workspacesSpec path =
           names `shouldNotContain` "@types/app"
           names `shouldNotContain` "utils"
 
+-- | Workspace target filtering: verify that filtering by workspace path
+-- scopes which workspaces contribute direct dependencies.
+workspaceFilterSpec :: Path Abs File -> Spec
+workspaceFilterSpec path =
+  describe "workspace target filtering" $ do
+    describe "filtered to root only" $
+      checkGraphWithFilter (Just (Set.singleton "")) path $ \graph -> do
+        let directDeps = Graphing.directList graph
+
+        it "should include root dev deps as direct" $
+          directDeps `shouldContainDep` mkDevDep "typescript" "5.3.3"
+
+        it "should not include sub-workspace deps as direct" $ do
+          let directNames = map dependencyName directDeps
+          directNames `shouldNotContain` "lodash"
+
+    describe "filtered to sub-workspace only" $
+      checkGraphWithFilter (Just (Set.singleton "packages/app")) path $ \graph -> do
+        let directDeps = Graphing.directList graph
+
+        it "should include sub-workspace deps as direct" $
+          directDeps `shouldContainDep` mkProdDep "lodash" "4.17.21"
+
+        it "should not include root deps as direct" $ do
+          let directNames = map dependencyName directDeps
+          directNames `shouldNotContain` "typescript"
+
 -- | Bun project: a real-world bun.lock from the bun project itself.
 -- Covers scoped packages, git refs, nested package keys, optional/peer deps
 -- in packages, and large dependency counts.
@@ -232,13 +260,16 @@ mixedEnvsSpec path =
 
 -- | Parse a bun.lock in IO for graph tests (outside the effect stack).
 checkGraph :: Path Abs File -> (Graphing Dependency -> Spec) -> Spec
-checkGraph path graphSpec = do
+checkGraph = checkGraphWithFilter Nothing
+
+checkGraphWithFilter :: Maybe (Set.Set Text) -> Path Abs File -> (Graphing Dependency -> Spec) -> Spec
+checkGraphWithFilter wsFilter path graphSpec = do
   result <- runIO $ parseBunLockIO path
   case result of
     Left err ->
       describe (fromAbsFile path) $
         it "should parse" (expectationFailure err)
-    Right lockfile -> graphSpec (buildGraph lockfile)
+    Right lockfile -> graphSpec (buildGraph wsFilter lockfile)
 
 parseBunLockIO :: Path Abs File -> IO (Either String BunLockfile)
 parseBunLockIO path = do
diff --git a/test/Node/NodeSpec.hs b/test/Node/NodeSpec.hs
index 87e7b234c..21ce9d550 100644
--- a/test/Node/NodeSpec.hs
+++ b/test/Node/NodeSpec.hs
@@ -13,7 +13,7 @@ import Data.Tagged (applyTag)
 import Graphing qualified
 import Path (Abs, Dir, Path, mkRelDir, mkRelFile, (</>))
 import Path.IO (getCurrentDir)
-import Strategy.Node (NodeProject (NPMLock), discover, extractDepListsForTargets, findWorkspaceBuildTargets, getDeps, resolveImporterPaths)
+import Strategy.Node (NodeProject (NPMLock), discover, extractDepListsForTargets, findWorkspaceBuildTargets, getDeps, resolveBunWorkspacePaths, resolveImporterPaths)
 import Strategy.Node.PackageJson (
   FlatDeps (..),
   Manifest (..),
@@ -58,6 +58,7 @@ spec = do
   workspaceBuildTargetsSpec currDir
   extractDepListsForTargetsSpec currDir
   resolveImporterPathsSpec currDir
+  resolveBunWorkspacePathsSpec currDir
 
 discoveredWorkSpaceProj :: Path Abs Dir -> DiscoveredProject NodeProject
 discoveredWorkSpaceProj currDir =
@@ -264,6 +265,31 @@ resolveImporterPathsSpec currDir = describe "resolveImporterPaths" $ do
             Set.fromList [BuildTarget "workspace-test", BuildTarget "pkg-a", BuildTarget "pkg-b"]
     resolveImporterPaths targets graph `shouldBe` Just (Set.fromList [".", "pkg-a", "nested/pkg-b"])
 
+resolveBunWorkspacePathsSpec :: Path Abs Dir -> Spec
+resolveBunWorkspacePathsSpec currDir = describe "resolveBunWorkspacePaths" $ do
+  let graph = workspaceGraphWithDeps currDir
+
+  it "returns Nothing for ProjectWithoutTargets" $ do
+    resolveBunWorkspacePaths ProjectWithoutTargets graph `shouldBe` Nothing
+
+  it "maps root target to empty string" $ do
+    let targets =
+          maybe ProjectWithoutTargets FoundTargets . nonEmpty $
+            Set.fromList [BuildTarget "workspace-test"]
+    resolveBunWorkspacePaths targets graph `shouldBe` Just (Set.singleton "")
+
+  it "maps workspace member targets to relative paths" $ do
+    let targets =
+          maybe ProjectWithoutTargets FoundTargets . nonEmpty $
+            Set.fromList [BuildTarget "pkg-a", BuildTarget "pkg-b"]
+    resolveBunWorkspacePaths targets graph `shouldBe` Just (Set.fromList ["pkg-a", "nested/pkg-b"])
+
+  it "maps all targets including root" $ do
+    let targets =
+          maybe ProjectWithoutTargets FoundTargets . nonEmpty $
+            Set.fromList [BuildTarget "workspace-test", BuildTarget "pkg-a", BuildTarget "pkg-b"]
+    resolveBunWorkspacePaths targets graph `shouldBe` Just (Set.fromList ["", "pkg-a", "nested/pkg-b"])
+
 -- | A workspace graph with actual dependencies for testing extractDepListsForTargets.
 workspaceGraphWithDeps :: Path Abs Dir -> PkgJsonGraph
 workspaceGraphWithDeps currDir =