Update bcftools (nf-core#8182)

* updated bcftools annotate to latest version

* updated bcftools call to latest version

* updated bcftools concat to latest version

* updated bcftools consensus to latest version

* updated bcftools convert to latest version

* updated bcftools csq to latest version

* updated bcftools filter to latest version

* updated bcftools index to latest version

* updated bcftools isec to latest version

* updated bcftools merge to latest version

* updated bcftools mpileup to latest version

* updated bcftools norm to latest version

* updated bcftools pluginimputeinfo to latest version

* updated bcftools pluginscatter to latest version

* updated bcftools pluginsplit to latest version

* updated bcftools plugintag2tag to latest version

* updated bcftools query latest version

* updated reheader query latest version

* updated roh query latest version

* updated sort query latest version

* updated split query latest version

* updated stats query latest version

* updated bcftools view latest version

* updated snapshot for bam_ngscheck mate after bcftools update

* added required tags to pass linting

* fixed bam_ngscheckmate to pass linting

* Fix bam_ngscheckmate

---------

Co-authored-by: Simon Pearce <[email protected]>

Author: 2 people

modules/nf-core/bcftools/annotate/environment.yml

@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::bcftools=1.20
+  - bioconda::bcftools=1.21

modules/nf-core/bcftools/annotate/main.nf

@@ -4,8 +4,8 @@ process BCFTOOLS_ANNOTATE {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bcftools:1.20--h8b25389_0':
-        'biocontainers/bcftools:1.20--h8b25389_0' }"
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/5a/5acacb55c52bec97c61fd34ffa8721fce82ce823005793592e2a80bf71632cd0/data':
+        'community.wave.seqera.io/library/bcftools:1.21--4335bec1d7b44d11' }"
 
     input:
     tuple val(meta), path(input), path(index), path(annotations), path(annotations_index)