From 3653fb071604fb7f7cada07f0e4491357cc3f281 Mon Sep 17 00:00:00 2001 From: culpo Date: Tue, 30 Apr 2019 13:56:50 +0200 Subject: [PATCH 1/2] paien: added tophat to Core (package does not compile with newer GCC) --- configuration/modules.yaml | 1 + paien.yaml | 3 +-- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/configuration/modules.yaml b/configuration/modules.yaml index 9c2383dc..2df73520 100644 --- a/configuration/modules.yaml +++ b/configuration/modules.yaml @@ -102,6 +102,7 @@ modules: 'tar%gcc@4.8.5', 'tensorflow', 'tmux', + 'tophat', 'totalview', 'trimmomatic', ] diff --git a/paien.yaml b/paien.yaml index 4aac7066..0c57792b 100644 --- a/paien.yaml +++ b/paien.yaml @@ -97,6 +97,7 @@ packages: - tar@1.30 - tmux@2.7 - trimmomatic@0.38 + - tophat@2.1.2 ^bowtie2@2.3.4.1 ^intel-tbb@2018.2 # List of third-party tools or of packages that are maintained # in our own repository @@ -470,8 +471,6 @@ packages: - bowtie2@2.3.4.1 ^intel-tbb@2018.2 - bcl2fastq2@2.20.0.422 ^boost+icu+python ^python@2.7.14+tk - ncview ^netcdf@4.6.1~mpi ^hdf5@1.10.1+szip~mpi+hl+fortran+cxx - # FIXME: see https://github.com/spack/spack/issues/8025 - # - tophat@2.1.1 ^bowtie2@2.3.4.1 ^intel-tbb@2018.2 # Serial applications built with the GNU stable stack and LAPACK gnu-lapack-applications: From 0259b9ef765ea2546daa335c0da94dcb3dea0a3b Mon Sep 17 00:00:00 2001 From: Ricardo Silva Date: Thu, 9 May 2019 12:43:09 +0200 Subject: [PATCH 2/2] Sorting --- paien.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/paien.yaml b/paien.yaml index 0c57792b..bbeef7d5 100644 --- a/paien.yaml +++ b/paien.yaml @@ -96,8 +96,8 @@ packages: - sra-toolkit@2.9.2 - tar@1.30 - tmux@2.7 - - trimmomatic@0.38 - tophat@2.1.2 ^bowtie2@2.3.4.1 ^intel-tbb@2018.2 + - trimmomatic@0.38 # List of third-party tools or of packages that are maintained # in our own repository