diff --git a/configuration/modules.yaml b/configuration/modules.yaml index 9c2383dc..2df73520 100644 --- a/configuration/modules.yaml +++ b/configuration/modules.yaml @@ -102,6 +102,7 @@ modules: 'tar%gcc@4.8.5', 'tensorflow', 'tmux', + 'tophat', 'totalview', 'trimmomatic', ] diff --git a/paien.yaml b/paien.yaml index 77f931b5..f9d64069 100644 --- a/paien.yaml +++ b/paien.yaml @@ -96,6 +96,7 @@ packages: - sra-toolkit@2.9.2 - tar@1.30 - tmux@2.7 + - tophat@2.1.2 ^bowtie2@2.3.4.1 ^intel-tbb@2018.2 - trimmomatic@0.38 # List of third-party tools or of packages that are maintained @@ -471,8 +472,6 @@ packages: - bowtie2@2.3.4.1 ^intel-tbb@2018.2 - bcl2fastq2@2.20.0.422 ^boost+icu+python ^python@2.7.14+tk - ncview ^netcdf@4.6.1~mpi ^hdf5@1.10.1+szip~mpi+hl+fortran+cxx - # FIXME: see https://github.com/spack/spack/issues/8025 - # - tophat@2.1.1 ^bowtie2@2.3.4.1 ^intel-tbb@2018.2 # Serial applications built with the GNU stable stack and LAPACK gnu-lapack-applications: