cwltool/setup.py at master · crim-ca/cwltool · GitHub

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#!/usr/bin/env python3
"""Setup for the reference implementation of the CWL standards."""
import os
import sys

import setuptools.command.egg_info as egg_info_cmd
from setuptools import setup

SETUP_DIR = os.path.dirname(__file__)
README = os.path.join(SETUP_DIR, "README.rst")

try:
    import gittaggers

    Tagger = gittaggers.EggInfoFromGit
except ImportError:
    Tagger = egg_info_cmd.egg_info

NEEDS_PYTEST = {"pytest", "test", "ptr"}.intersection(sys.argv)
PYTEST_RUNNER = ["pytest-runner", "pytest-cov"] if NEEDS_PYTEST else []

setup(
    name="cwltool",
    version="2.0",
    description="Common workflow language reference implementation",
    long_description=open(README).read(),
    long_description_content_type="text/x-rst",
    author="Common workflow language working group",
    author_email="common-workflow-language@googlegroups.com",
    url="https://github.com/common-workflow-language/cwltool",
    download_url="https://github.com/common-workflow-language/cwltool",
    # platforms='',  # empty as is conveyed by the classifier below
    # license='',  # empty as is conveyed by the classifier below
    packages=["cwltool", "cwltool.tests"],
    package_dir={"cwltool.tests": "tests"},
    package_data={
        "cwltool": [
            "schemas/v1.0/*.yml",
            "schemas/v1.0/*.md",
            "schemas/v1.0/salad/schema_salad/metaschema/*.yml",
            "schemas/v1.0/salad/schema_salad/metaschema/*.md",
            "schemas/v1.1.0-dev1/*.yml",
            "schemas/v1.1.0-dev1/*.md",
            "schemas/v1.1.0-dev1/salad/schema_salad/metaschema/*.yml",
            "schemas/v1.1.0-dev1/salad/schema_salad/metaschema/*.md",
            "schemas/v1.1/*.yml",
            "schemas/v1.1/*.md",
            "schemas/v1.1/salad/schema_salad/metaschema/*.yml",
            "schemas/v1.1/salad/schema_salad/metaschema/*.md",
            "cwlNodeEngine.js",
            "cwlNodeEngineJSConsole.js",
            "extensions.yml",
            "hello.simg",
        ]
    },
    include_package_data=True,
    install_requires=[
        "setuptools",
        "requests >= 2.6.1",  # >= 2.6.1 to workaround
        # https://github.com/ionrock/cachecontrol/issues/137
        "ruamel.yaml >= 0.12.4, <= 0.16.5",
        "rdflib >= 4.2.2, < 4.3.0",
        "shellescape >= 3.4.1, < 3.5",
        "schema-salad >= 5.0.20200126033820, < 6",
        "mypy-extensions",
        "psutil",
        "prov == 1.5.1",
        "bagit >= 1.6.4",
        "typing-extensions",
        "coloredlogs",
        "pathlib2 != 2.3.1",
    ],
    extras_require={
        ':python_version<"3.6"': ["typing >= 3.5.3"],
        "deps": ["galaxy-tool-util"],
        "docs": ["sphinx >= 2.2", "sphinx-rtd-theme"],
    },
    python_requires=">=3.5, <4",
    setup_requires=PYTEST_RUNNER,
    test_suite="tests",
    tests_require=[
        "pytest < 6",
        "mock >= 2.0.0",
        "pytest-mock >= 1.10.0",
        "arcp >= 0.2.0",
        "rdflib-jsonld >= 0.4.0",
    ],
    entry_points={"console_scripts": ["cwltool=cwltool.main:run"]},
    zip_safe=True,
    cmdclass={"egg_info": Tagger},
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Environment :: Console",
        "Intended Audience :: Developers",
        "Intended Audience :: Science/Research",
        "Intended Audience :: Healthcare Industry",
        "License :: OSI Approved :: Apache Software License",
        "Natural Language :: English",
        "Operating System :: MacOS :: MacOS X",
        "Operating System :: POSIX",
        "Operating System :: POSIX :: Linux",
        "Operating System :: OS Independent",
        "Operating System :: Microsoft :: Windows",
        "Operating System :: Microsoft :: Windows :: Windows 10",
        "Operating System :: Microsoft :: Windows :: Windows 8.1",
        # 'Operating System :: Microsoft :: Windows :: Windows 8',  # not tested
        # 'Operating System :: Microsoft :: Windows :: Windows 7',  # not tested
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.5",
        "Programming Language :: Python :: 3.6",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Topic :: Scientific/Engineering",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "Topic :: Scientific/Engineering :: Astronomy",
        "Topic :: Scientific/Engineering :: Atmospheric Science",
        "Topic :: Scientific/Engineering :: Information Analysis",
        "Topic :: Scientific/Engineering :: Medical Science Apps.",
        "Topic :: System :: Distributed Computing",
        "Topic :: Utilities",
    ],
)