DESCRIPTION

Package: ggpicrust2
Type: Package
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Version: 2.5.17
Author: Chen Yang [aut, cre], Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Authors@R: c(
    person("Chen", "Yang", email = "cafferychen7850@gmail.com", role = c("aut", "cre")),
    person("Liangliang", "Zhang", email = "lxz716@case.edu ", role = "aut"))
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
BugReports: https://github.com/cafferychen777/ggpicrust2/issues
URL: https://github.com/cafferychen777/ggpicrust2, https://cafferyang.com/ggpicrust2/
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Imports:
    aplot,
    dplyr,
    ggplot2,
    grid,
    ggh4x,
    readr,
    tibble,
    tidyr,
    ggprism,
    patchwork,
    ggplotify,
    magrittr,
    progress,
    stats,
    methods,
    grDevices,
    tidygraph,
    ggraph,
    utils
Depends:
    R (>= 3.5.0)
Suggests:
    Biobase,
    ggdendro,
    KEGGREST,
    ComplexHeatmap,
    BiocGenerics,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    ALDEx2,
    DESeq2,
    edgeR,
    GGally,
    limma,
    MicrobiomeStat,
    SummarizedExperiment,
    circlize,
    lefser,
    Maaslin2,
    metagenomeSeq,
    fgsea,
    clusterProfiler,
    enrichplot,
    DOSE,
    ggVennDiagram,
    UpSetR,
    igraph,
    ggridges,
    ggrepel,
    logging
Config/testthat/edition: 3
biocViews: Microbiome, Metagenomics, Software
VignetteBuilder: knitr