Commit 9722111
distributed merge of per-rank Megatron data files (#55)
* add parallel merge using mpi
* handle case where some ranks might have 0 items
* add inclusive scan prefix sum
* report more timing info
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* rename total size variable for clarity
* move translation to bin/idx file names a level deeper
* parallel merge for cached dataset
* add alltrue function
* move collectives to new distdata class, add torch.distributed
* drop unused prefix_sum function
* allow ranks to pass a list of files to be merged
* check that input dataset files exist
* fix: using wrong doc_idx list for mmap
* move init dist and collectives to distdata class
* add --merge option, move parallel/serial to their own functions
* Update megatron/data/distdata.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* Update megatron/data/indexed_dataset.py
Co-authored-by: Thomas Wang <[email protected]>
* drop extraneous numpy tolist calls
* rename self.MPI to mpi4py
* handle case where no ranks have elements in their file
* rename tokenize_start to time_start
* drop unrelated comment in distdata.min
* add comment why pointers_shift is not None and add assert
* note why pointers uses sizes count and offset values
* can just rely on rank 0 for the leading 0 element
* add write_list function
* determine element size
* add checks for consistent element_size values
* check that at least one rank has a file to merge
* assert that torch backend is gloo or mpi
* add collectives for assert and raise
* rename to allassert and allraise_if
* check dtype instead of element_size
* add uint32 to element_sizes table
* infer dtype from files being merged
* add write_header function to indexed dataset classes
* call write_header internally from IndexedDataset classes
* return number of bytes written from write calls
* move scatterv to distdata class
* add functions to format status and error messages
* defer merge_files_dist to future PR
* open files using with, refresh comments
* rely on default torch datatypes
* fix some status messages from preprocess script
* fix: exclusive scan computing pointers list
* fix: exclusive scan to compute mmap pointers list
* note about seek
* rename preprocess_dataset_mpi.py to preprocess_data_dist.py
* update usage comments at top of script
* restore commented print_rank_0 statements
* restore status message in mmap merge_file_
* drop mpi4py, sad :(
* add test case for parallel merge
* add preprocess_data_dist test for serial merge
* improve error handling
* refactor get_pointers code
* bug fix in exscan
* further refactor get_pointers
* move exscan collective for pointers outside of try block
* clarify some comments
* include string 1k in name of test files
* use temporary file for index
* fix: implement scatterv from torch.distributed.scatter
* switch to pad method in torch.nn.functional
* return data received in scatterv as new tensor
* raise exception if conflicting scratch and merge options
* use allraise method from distdata in preprocess_data_dist
Co-authored-by: Thomas Wang <[email protected]>1 parent 6d88ae2 commit 9722111
File tree
4 files changed
+992
-208
lines changed- megatron/data
- tests
- tools
4 files changed
+992
-208
lines changed| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
| 1 | + | |
| 2 | + | |
| 3 | + | |
| 4 | + | |
| 5 | + | |
| 6 | + | |
| 7 | + | |
| 8 | + | |
| 9 | + | |
| 10 | + | |
| 11 | + | |
| 12 | + | |
| 13 | + | |
| 14 | + | |
| 15 | + | |
| 16 | + | |
| 17 | + | |
| 18 | + | |
| 19 | + | |
| 20 | + | |
| 21 | + | |
| 22 | + | |
| 23 | + | |
| 24 | + | |
| 25 | + | |
| 26 | + | |
| 27 | + | |
| 28 | + | |
| 29 | + | |
| 30 | + | |
| 31 | + | |
| 32 | + | |
| 33 | + | |
| 34 | + | |
| 35 | + | |
| 36 | + | |
| 37 | + | |
| 38 | + | |
| 39 | + | |
| 40 | + | |
| 41 | + | |
| 42 | + | |
| 43 | + | |
| 44 | + | |
| 45 | + | |
| 46 | + | |
| 47 | + | |
| 48 | + | |
| 49 | + | |
| 50 | + | |
| 51 | + | |
| 52 | + | |
| 53 | + | |
| 54 | + | |
| 55 | + | |
| 56 | + | |
| 57 | + | |
| 58 | + | |
| 59 | + | |
| 60 | + | |
| 61 | + | |
| 62 | + | |
| 63 | + | |
| 64 | + | |
| 65 | + | |
| 66 | + | |
| 67 | + | |
| 68 | + | |
| 69 | + | |
| 70 | + | |
| 71 | + | |
| 72 | + | |
| 73 | + | |
| 74 | + | |
| 75 | + | |
| 76 | + | |
| 77 | + | |
| 78 | + | |
| 79 | + | |
| 80 | + | |
| 81 | + | |
| 82 | + | |
| 83 | + | |
| 84 | + | |
| 85 | + | |
| 86 | + | |
| 87 | + | |
| 88 | + | |
| 89 | + | |
| 90 | + | |
| 91 | + | |
| 92 | + | |
| 93 | + | |
| 94 | + | |
| 95 | + | |
| 96 | + | |
| 97 | + | |
| 98 | + | |
| 99 | + | |
| 100 | + | |
| 101 | + | |
| 102 | + | |
| 103 | + | |
| 104 | + | |
| 105 | + | |
| 106 | + | |
| 107 | + | |
| 108 | + | |
| 109 | + | |
| 110 | + | |
| 111 | + | |
| 112 | + | |
| 113 | + | |
| 114 | + | |
| 115 | + | |
| 116 | + | |
| 117 | + | |
| 118 | + | |
| 119 | + | |
| 120 | + | |
| 121 | + | |
| 122 | + | |
| 123 | + | |
| 124 | + | |
| 125 | + | |
| 126 | + | |
| 127 | + | |
| 128 | + | |
| 129 | + | |
| 130 | + | |
| 131 | + | |
| 132 | + | |
| 133 | + | |
| 134 | + | |
| 135 | + | |
| 136 | + | |
| 137 | + | |
| 138 | + | |
| 139 | + | |
| 140 | + | |
| 141 | + | |
| 142 | + | |
| 143 | + | |
| 144 | + | |
| 145 | + | |
| 146 | + | |
| 147 | + | |
| 148 | + | |
| 149 | + | |
| 150 | + | |
| 151 | + | |
| 152 | + | |
| 153 | + | |
| 154 | + | |
| 155 | + | |
| 156 | + | |
| 157 | + | |
| 158 | + | |
| 159 | + | |
| 160 | + | |
| 161 | + | |
| 162 | + | |
| 163 | + | |
| 164 | + | |
| 165 | + | |
| 166 | + | |
| 167 | + | |
| 168 | + | |
| 169 | + | |
| 170 | + | |
| 171 | + | |
| 172 | + | |
| 173 | + | |
| 174 | + | |
| 175 | + | |
| 176 | + | |
| 177 | + | |
| 178 | + | |
| 179 | + | |
| 180 | + | |
| 181 | + | |
| 182 | + | |
| 183 | + | |
| 184 | + | |
| 185 | + | |
| 186 | + | |
| 187 | + | |
| 188 | + | |
| 189 | + | |
| 190 | + | |
| 191 | + | |
| 192 | + | |
| 193 | + | |
| 194 | + | |
| 195 | + | |
| 196 | + | |
| 197 | + | |
| 198 | + | |
| 199 | + | |
| 200 | + | |
| 201 | + | |
| 202 | + | |
| 203 | + | |
| 204 | + | |
| 205 | + | |
| 206 | + | |
| 207 | + | |
| 208 | + | |
| 209 | + | |
| 210 | + | |
| 211 | + | |
| 212 | + | |
| 213 | + | |
| 214 | + | |
| 215 | + | |
| 216 | + | |
| 217 | + | |
| 218 | + | |
| 219 | + | |
| 220 | + | |
0 commit comments