Fixed reverse complement of IUPAC codes

Author: patriciaplchan

change_log.txt

@@ -1,3 +1,12 @@
+v2.0.11
+- Fixed reverse complement of IUPAC codes
+
+v2.0.10
+- Added new covariance model to detect vertebrate mt-tRNA-Cys without D-arm in
+armadillos and some reptiles
+- Added MitoHighConfidenceFilter, a post-filtering tool, for annotating 
+possible mitochondrial tRNA pseudogenes or extra genes due to duplication events
+
 v2.0.9
 - Added option -j or --gff for generating GFF3 output file
 - Checked Infernal version compatibilty

lib/tRNAscanSE/Utils.pm

@@ -19,7 +19,7 @@ our %comp_map = (                     # Complement map
                 'A' => 'T', 'T' => 'A', 'U' => 'A',
                 'G' => 'C', 'C' => 'G',
                 'Y' => 'R', 'R' => 'Y', 
-                'S' => 'W', 'W' => 'S', 
+                'S' => 'S', 'W' => 'W', 
                 'M' => 'K', 'K' => 'M', 
                 'B' => 'V', 'V' => 'B', 
                 'H' => 'D', 'D' => 'H', 

tRNAscan-SE.src

@@ -4,7 +4,7 @@
 # tRNAscan-SE: a program for improved detection of transfer RNA
 #              genes in genomic sequence
 #
-# Version 2.0.10
+# Version 2.0.11
 #
 # Copyright (C) 2022 Patricia Chan and Todd Lowe 
 #
@@ -39,8 +39,8 @@ use tRNAscanSE::IntResultFile;
 use tRNAscanSE::MultiResultFile;
 use tRNAscanSE::SS;
 
-our $version = "2.0.10"; 
-our $release_date = "Sept 2022";
+our $version = "2.0.11"; 
+our $release_date = "Oct 2022";
 our $program_id = "tRNAscan-SE-".$version;
 
 # modified by 'make'