diff --git a/falcon_kit/mains/fetch_reads.py b/falcon_kit/mains/fetch_reads.py
index 9f7b4581..c5b1c185 100644
--- a/falcon_kit/mains/fetch_reads.py
+++ b/falcon_kit/mains/fetch_reads.py
@@ -64,10 +64,10 @@ def pid_to_oid(pid):
     with open(map_fn, 'r') as f:
         for row in f:
             row = row.strip().split()
-            hit_ctg = row[1]
-            hit_ctg = hit_ctg.split('-')[0]
-            if hit_ctg not in read_set and int(row[3]) == 0:
-                o_id = pid_to_oid(row[0])
+            o_id = pid_to_oid(row[0])
+            if o_id not in read_set and int(row[3]) == 0:
+                hit_ctg = row[1]
+                hit_ctg = hit_ctg.split("-")[0]
                 read_set[o_id] = hit_ctg
                 ctg_id_hits[hit_ctg] = ctg_id_hits.get(hit_ctg, 0) + 1
 
diff --git a/falcon_kit/mains/graph_to_contig.py b/falcon_kit/mains/graph_to_contig.py
index d0048373..16fca04b 100644
--- a/falcon_kit/mains/graph_to_contig.py
+++ b/falcon_kit/mains/graph_to_contig.py
@@ -258,11 +258,11 @@ def main(argv=None):
                     delta_len = len(seq) - len(base_seq)
                     idt = 0.0
                     cov = 0.0
-                    if len(base_seq) > 2000 and len(seq) > 2000:
-                        aln_data, x, y = get_aln_data(base_seq, seq)
-                        if len( aln_data ) != 0:
-                            idt =  1.0-1.0*aln_data[-1][-1] / aln_data[-1][-2]
-                            cov = 1.0*(aln_data[-1][3]-aln_data[-1][2])/aln_data[-1][4]
+                    #if len(base_seq) > 2000 and len(seq) > 2000:
+                    #    aln_data, x, y = get_aln_data(base_seq, seq)
+                    #    if len( aln_data ) != 0:
+                    #        idt =  1.0-1.0*aln_data[-1][-1] / aln_data[-1][-2]
+                    #        cov = 1.0*(aln_data[-1][3]-aln_data[-1][2])/aln_data[-1][4]
 
                     atig_output.append( (v, w, atig_path, total_length, total_score, seq, atig_path_edges, delta_len, idt, cov) )