peax/examples/config-encode-h1.json at develop · Novartis/peax · GitHub

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{
  "encoders": [
    {
      "content_type": "histone-mark-chip-seq-12kb",
      "from_file": "examples/autoencoders.json"
    }
  ],
  "datasets": [
    {
      "filepath": "examples/data/ENCFF117WXM.bigWig",
      "content_type": "histone-mark-chip-seq-12kb",
      "id": "encode-h1-hesc-encsr794ofw-2013-dnase-seq-rdn-signal",
      "name": "H1 DNase rdn signal"
    },
    {
      "filepath": "examples/data/ENCFF593OAZ.bigWig",
      "content_type": "histone-mark-chip-seq-12kb",
      "id": "encode-h1-hesc-encsr271tfs-2013-chip-seq-h3k4me1-fc",
      "name": "H1 H3K4me1 fc"
    },
    {
      "filepath": "examples/data/ENCFF623ZAW.bigWig",
      "content_type": "histone-mark-chip-seq-12kb",
      "id": "encode-h1-hesc-encsr443yas-2013-chip-seq-h3k4me3-fc",
      "name": "H1 H3K4me3 fc"
    },
    {
      "filepath": "examples/data/ENCFF986PCY.bigWig",
      "content_type": "histone-mark-chip-seq-12kb",
      "id": "encode-h1-hesc-encsr880suy-2013-chip-seq-h3k27ac-fc",
      "name": "H1 H3K27ac fc"
    }
  ],
  "coords": "grch38",
  "chroms": ["chr21"],
  "step_freq": 4,
  "db_path": "examples/search-h1.db"
}