arcasHLA-0.2.0-foss-2019b-Python-3.7.4.eb

easyblock = 'Tarball'

name = 'arcasHLA'
version = '0.2.0'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/RabadanLab/arcasHLA'
description = """arcasHLA performs high resolution genotyping for HLA class I and class II
genes from RNA sequencing, supporting both paired and single-end samples."""

toolchain = {'name': 'foss', 'version': '2019b'}

github_account = 'RabadanLab'
source_urls = [GITHUB_SOURCE]
sources = ['v%(version)s.tar.gz']
checksums = ['0ac0f67f7206660e80b3163e6adc1e02c5ef87879e6366c49c16ee1ccbf83c40']

dependencies = [
    ('Python', '3.7.4'),
    ('SciPy-bundle', '2019.10', versionsuffix),
    ('Biopython', '1.75', versionsuffix),
    ('BEDTools', '2.29.2'),
    ('kallisto', '0.46.1'),
    ('SAMtools', '1.10'),
    ('pigz', '2.4'),
    ('git', '2.23.0', '-nodocs'),
    ('git-lfs', '2.11.0', '', SYSTEM),
]

# Download and install the reference database (1.8 GB)
postinstallcmds = ["cd %(installdir)s && git lfs install && ./arcasHLA reference --update --verbose"]

sanity_check_paths = {
    'files': ['arcasHLA'],
    'dirs': ['dat', 'dat/IMGTHLA', 'scripts', 'test'],
}

sanity_check_commands = ['arcasHLA --help']

modextrapaths = {
    'PATH': [''],
    'PYTHONPATH': ['scripts'],
}

moduleclass = 'bio'