diff --git a/.travis.yml b/.travis.yml index a7b00026..4ca5071d 100644 --- a/.travis.yml +++ b/.travis.yml @@ -2,7 +2,7 @@ language: julia os: - linux julia: - - 1.3 + - 1.4 env: global: - PYTHON=conda diff --git a/Manifest.toml b/Manifest.toml index a5a7e7d3..77da56ed 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -14,15 +14,21 @@ version = "0.4.0" [[Arpack_jll]] deps = ["Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "68a90a692ddc0eb72d69a6993ca26e2a923bf195" +git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.0+2" +version = "3.5.0+3" [[ArrayInterface]] deps = ["LinearAlgebra", "Requires", "SparseArrays"] -git-tree-sha1 = "4f1109cf20b2a31b5196f346bba07b2c61587442" +git-tree-sha1 = "5f34aee5e5dbc1ce5cfb137d63f719a64d98ae82" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "2.4.1" +version = "2.8.5" + +[[ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "f8904599065b57f51715faf6278126f853aef6fc" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "0.2.4" [[AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -30,6 +36,11 @@ git-tree-sha1 = "a4d07a1c313392a77042855df46c5f534076fab9" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" version = "1.0.0" +[[BSON]] +git-tree-sha1 = "e794bd8f3f319218e8c8b46657631bdbea2807ca" +uuid = "fbb218c0-5317-5bc6-957e-2ee96dd4b1f0" +version = "0.2.5" + [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -41,15 +52,15 @@ version = "0.5.8" [[Bzip2_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "92463331a641b19fc3baa427e0b76cdbd54dc05d" +git-tree-sha1 = "3663bfffede2ef41358b6fc2e1d8a6d50b3c3904" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.6+1" +version = "1.0.6+2" [[CSV]] deps = ["CategoricalArrays", "DataFrames", "Dates", "FilePathsBase", "Mmap", "Parsers", "PooledArrays", "Tables", "Unicode", "WeakRefStrings"] -git-tree-sha1 = "dd7861a31c6a2a9404186a80e5dec919a25b3abb" +git-tree-sha1 = "8fe77a5478781d59a9ba17f0ac47dda2be5f8ae7" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.5.25" +version = "0.6.1" [[CategoricalArrays]] deps = ["Compat", "DataAPI", "Future", "JSON", "Missings", "Printf", "Reexport", "Statistics", "Unicode"] @@ -59,9 +70,9 @@ version = "0.7.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "f387d5937d0c9d0191c711d7d204bce15bd23b45" +git-tree-sha1 = "7846d785d9e4bcc904b70689bde8413f85b0ca20" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.13.3" +version = "0.14.0" [[CodecZlib]] deps = ["BinaryProvider", "Libdl", "TranscodingStreams"] @@ -71,15 +82,15 @@ version = "0.6.0" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "b9de8dc6106e09c79f3f776c27c62360d30e5eb8" +git-tree-sha1 = "dc232130b48be37c2612d32a3196f37f3aa50e24" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.9.1" +version = "0.10.1" [[Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Printf", "Reexport"] -git-tree-sha1 = "177d8b959d3c103a6d57574c38ee79c81059c31b" +deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"] +git-tree-sha1 = "2fdeb981ebcf52cd800ddb6a0aa5eac34153552d" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.11.2" +version = "0.12.0" [[CommonSubexpressions]] deps = ["Test"] @@ -88,21 +99,21 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.2.0" [[Compat]] -deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "ed2c4abadf84c53d9e58510b5fc48912c2336fbb" +deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] +git-tree-sha1 = "0198d18b28c093bef39872a22f1a897218a925f5" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "2.2.0" +version = "3.8.0" [[CompilerSupportLibraries_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "b57c5d019367c90f234a7bc7e24ff0a84971da5d" +git-tree-sha1 = "7c4f882c41faa72118841185afc58a2eb00ef612" uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "0.2.0+1" +version = "0.3.3+0" [[ComputationalResources]] -git-tree-sha1 = "59aa488537311b5401f39faeb07ca7621e36e256" +git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" -version = "0.3.1" +version = "0.3.2" [[Conda]] deps = ["JSON", "VersionParsing"] @@ -111,10 +122,10 @@ uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" version = "1.4.1" [[Contour]] -deps = ["LinearAlgebra", "StaticArrays", "Test"] -git-tree-sha1 = "b974e164358fea753ef853ce7bad97afec15bb80" +deps = ["StaticArrays"] +git-tree-sha1 = "6d56f927b33d3820561b8f89d7de311718683846" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.5.1" +version = "0.5.2" [[Crayons]] git-tree-sha1 = "cb7a62895da739fe5bb43f1a26d4292baf4b3dc0" @@ -134,9 +145,9 @@ version = "0.20.2" [[DataStructures]] deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "5a431d46abf2ef2a4d5d00bd0ae61f651cf854c8" +git-tree-sha1 = "4dead20a1606a60292529023d6eac18a1ef6432e" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.10" +version = "0.17.12" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -187,9 +198,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "6b19601c0e98de3a8964ed33ad73e130c7165b1d" +git-tree-sha1 = "c4ed10355637fcb0725dc6a27060f74df24f13cd" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.22.4" +version = "0.23.2" [[DocStringExtensions]] deps = ["LibGit2", "Markdown", "Pkg", "Test"] @@ -199,14 +210,14 @@ version = "0.8.1" [[Documenter]] deps = ["Base64", "Dates", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "d497bcc45bb98a1fbe19445a774cfafeabc6c6df" +git-tree-sha1 = "bc99c157ff2957c058a1067061d16c2c83d1ec42" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.24.5" +version = "0.24.9" [[ElasticArrays]] -git-tree-sha1 = "5b5b7cb8cba44bcf337b8af0a1f3e57c89468660" +git-tree-sha1 = "6643de157ea3332d73e35a6a6ed2bdffe7792b12" uuid = "fdbdab4c-e67f-52f5-8c3f-e7b388dad3d4" -version = "1.0.0" +version = "1.1.0" [[ElasticPDMats]] deps = ["LinearAlgebra", "MacroTools", "PDMats", "Test"] @@ -215,9 +226,9 @@ uuid = "2904ab23-551e-5aed-883f-487f97af5226" version = "0.2.1" [[ExprTools]] -git-tree-sha1 = "08c1f74d9ad03acf0ee84c12c9e665ab1a9a6e33" +git-tree-sha1 = "6f0517056812fd6aa3af23d4b70d5325a2ae4e95" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.0" +version = "0.1.1" [[EzXML]] deps = ["Printf", "XML2_jll"] @@ -245,9 +256,9 @@ version = "1.2.0" [[FFTW_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "ddb57f4cf125243b4aa4908c94d73a805f3cbf2c" +git-tree-sha1 = "6c975cd606128d45d1df432fb812d6eb10fee00b" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.9+4" +version = "3.3.9+5" [[FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions"] @@ -257,9 +268,9 @@ version = "0.4.2" [[FileIO]] deps = ["Pkg"] -git-tree-sha1 = "2c84c57aced468fa21763c66d3bef33adcd09ec7" +git-tree-sha1 = "3d7cb2c4c850439f19c4d6d3fbe1dce6481cddb1" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.2.2" +version = "1.2.4" [[FilePathsBase]] deps = ["Dates", "LinearAlgebra", "Printf", "Test", "UUIDs"] @@ -272,20 +283,20 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "85c6b57e2680fa28d5c8adc798967377646fbf66" +git-tree-sha1 = "51cc2f9bc4eb9c6c0e81ec2f779d1085583cc956" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.8.5" +version = "0.8.7" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "aa78e468afa6a0fde472c3dba0782d1ab60b203d" +git-tree-sha1 = "f60e5d6944975f7140bde67278e10b6b01fb4f29" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.2.1" +version = "2.3.0" [[FixedPointNumbers]] -git-tree-sha1 = "4aaea64dd0c30ad79037084f8ca2b94348e65eaa" +git-tree-sha1 = "3ba9ea634d4c8b289d590403b4a06f8e227a6238" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.7.1" +version = "0.8.0" [[Formatting]] deps = ["Printf"] @@ -295,26 +306,26 @@ version = "0.4.1" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "88b082d492be6b63f967b6c96b352e25ced1a34c" +git-tree-sha1 = "869540e4367122fbffaace383a5bdc34d6e5e5ac" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.9" +version = "0.10.10" [[Franklin]] deps = ["Dates", "DelimitedFiles", "DocStringExtensions", "FranklinTemplates", "HTTP", "Literate", "LiveServer", "Logging", "Markdown", "NodeJS", "OrderedCollections", "Pkg", "Random"] -git-tree-sha1 = "5491535a52546c1b76ca39dae7b7c97fef5d6e93" +git-tree-sha1 = "01acc7748f2f89f93b89a3cf0abe58953a6ab032" uuid = "713c75ef-9fc9-4b05-94a9-213340da978e" -version = "0.6.5" +version = "0.7.3" [[FranklinTemplates]] -git-tree-sha1 = "77313279fc485e082b1fddd289066805a900c23a" +git-tree-sha1 = "c622f46a2c471985b835b7c3ba21cf5b46f6298e" uuid = "3a985190-f512-4703-8d38-2a7944ed5916" -version = "0.5.5" +version = "0.6.0" [[FreeType2_jll]] deps = ["Bzip2_jll", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "8e290780d75bc0f676548c3bb84c153f83d14bdc" +git-tree-sha1 = "7d900f32a3788d4eacac2bfa3bf5c770179c8afd" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.1+1" +version = "2.10.1+2" [[FriBidi_jll]] deps = ["Libdl", "Pkg"] @@ -328,15 +339,15 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "6666bd8181b2f4cb5347001e8d8ef453c50de5b0" +git-tree-sha1 = "db0ace36f9dbe7b6a7a08434c5921377e9df2c72" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.3.7" +version = "1.3.9" [[GR]] deps = ["Base64", "DelimitedFiles", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"] -git-tree-sha1 = "41dd1395d4dc559f1c2cb558cba784ef37b561fe" +git-tree-sha1 = "7ea6f715b7caa10d7ee16f1cfcd12f3ccc74116a" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.47.0" +version = "0.48.0" [[GaussianMixtures]] deps = ["Arpack", "Clustering", "Compat", "DelimitedFiles", "Distributed", "Distributions", "FileIO", "JLD2", "LinearAlgebra", "Logging", "PDMats", "Printf", "RDatasets", "Random", "ScikitLearnBase", "SpecialFunctions", "Statistics", "StatsBase", "Test"] @@ -346,21 +357,21 @@ version = "0.3.1" [[GaussianProcesses]] deps = ["Distances", "Distributions", "Documenter", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns", "Zygote"] -git-tree-sha1 = "105c668971f973b0f1b84931b0d68b94da78e692" +git-tree-sha1 = "78a9285fecbeee4849023f1f1906db9fd765d768" uuid = "891a1506-143c-57d2-908e-e1f8e92e6de9" -version = "0.11.2" +version = "0.12.0" [[GeometryTypes]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "480f30bd8e67240636e6d64e062c83745ee45b88" +git-tree-sha1 = "96fd99cf83b1952a7d8cb54f4c585a648275805a" uuid = "4d00f742-c7ba-57c2-abde-4428a4b178cb" -version = "0.7.9" +version = "0.8.2" [[HTTP]] deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] -git-tree-sha1 = "8d9bdd55c9d0d6ddf08f8b5229f90b7f274b6777" +git-tree-sha1 = "fe31f4ff144392ad8176f5c7c03cca6ba320271c" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "0.8.12" +version = "0.8.14" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] @@ -386,9 +397,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Interpolations]] deps = ["AxisAlgorithms", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "f5bf159a7705e2a705b0effa1be0c3d18e288fe1" +git-tree-sha1 = "3af735234d9b1ff9ff1af89875735cd9549c0c5f" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.12.5" +version = "0.12.9" [[InvertedIndices]] deps = ["Test"] @@ -402,10 +413,10 @@ uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" version = "1.3.0" [[IterativeSolvers]] -deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays", "Test"] -git-tree-sha1 = "5687f68018b4f14c0da54d402bb23eecaec17f37" +deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] +git-tree-sha1 = "3b7e2aac8c94444947facea7cc7ca91c49169be0" uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.8.1" +version = "0.8.4" [[IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -418,6 +429,12 @@ git-tree-sha1 = "d6cfa7c24e27d7eaa2290372739c8298257dae16" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" version = "0.1.12" +[[JLSO]] +deps = ["BSON", "CodecZlib", "FilePathsBase", "Memento", "Pkg", "Serialization"] +git-tree-sha1 = "250ffc4f6e9c7c38f5e96fe45218ea77ec50635d" +uuid = "9da8a3cd-07a3-59c0-a743-3fdc52c30d11" +version = "2.3.1" + [[JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e" @@ -474,9 +491,9 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[Libiconv_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "802f5b23c846cb4ed568cae0bfb0ce0d2ba1926d" +git-tree-sha1 = "e5256a3b0ebc710dbd6da0c0b212164a3681037f" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.0+1" +version = "1.16.0+2" [[LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf", "Test"] @@ -496,9 +513,9 @@ version = "2.6.1" [[Literate]] deps = ["Base64", "JSON", "REPL"] -git-tree-sha1 = "82a49cc6c1a38980c537edef7f9998a1843b441d" +git-tree-sha1 = "ac48e6b189a3e993788e1776485625bcbed3504d" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" -version = "2.3.0" +version = "2.3.1" [[LiveServer]] deps = ["Crayons", "Documenter", "FileWatching", "HTTP", "Pkg", "Sockets", "Test"] @@ -523,51 +540,51 @@ version = "2019.0.117+2" [[MLJ]] deps = ["CategoricalArrays", "ComputationalResources", "Distributed", "Distributions", "LinearAlgebra", "MLJBase", "MLJModels", "MLJScientificTypes", "MLJTuning", "Pkg", "ProgressMeter", "Random", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "0ed283eb8b63d7ae5b37b30ca28c0d9f59a0b8ca" +git-tree-sha1 = "bdf59a5bbb6da10dea1c265d6f06fdb83e6c73a5" uuid = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7" -version = "0.9.2" +version = "0.10.3" [[MLJBase]] -deps = ["CategoricalArrays", "ComputationalResources", "DelimitedFiles", "Distributed", "Distributions", "HTTP", "InteractiveUtils", "InvertedIndices", "JSON", "LinearAlgebra", "LossFunctions", "MLJModelInterface", "MLJScientificTypes", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "ScientificTypes", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "8e7a07ba6a2322b1c2b1e33f49faaaf4dde6cce5" +deps = ["CategoricalArrays", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "HTTP", "InteractiveUtils", "InvertedIndices", "JLSO", "JSON", "LinearAlgebra", "LossFunctions", "MLJModelInterface", "MLJScientificTypes", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "ScientificTypes", "Statistics", "StatsBase", "Tables"] +git-tree-sha1 = "a393f3e1efc149e964daf1641f7743f6c870c834" uuid = "a7f614a8-145f-11e9-1d2a-a57a1082229d" -version = "0.11.9" +version = "0.12.8" [[MLJLinearModels]] deps = ["DocStringExtensions", "IterativeSolvers", "LinearAlgebra", "LinearMaps", "MLJModelInterface", "Optim", "Parameters"] -git-tree-sha1 = "69782417b7812df9fbae888111e5308246e30a35" +git-tree-sha1 = "f97c053f1dba2e80c4ab6f3c53cf64cca33146e3" uuid = "6ee0df7b-362f-4a72-a706-9e79364fb692" -version = "0.3.1" +version = "0.3.2" [[MLJModelInterface]] -deps = ["ScientificTypes"] -git-tree-sha1 = "fb026cc5d02195c391e4e50f53302f87b736f83b" +deps = ["Random", "ScientificTypes"] +git-tree-sha1 = "fc3b93e1905cc86c37bb0efc57ff26669a956bcb" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "0.1.8" +version = "0.2.1" [[MLJModels]] -deps = ["CategoricalArrays", "Compat", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJBase", "MLJModelInterface", "MultivariateStats", "OrderedCollections", "Parameters", "Pkg", "Random", "Requires", "ScientificTypes", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "a3ec3c571cc77a74b5fda19281dd8997ea9146f2" +deps = ["CategoricalArrays", "Dates", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJBase", "MLJModelInterface", "MultivariateStats", "OrderedCollections", "Parameters", "Pkg", "Random", "Requires", "ScientificTypes", "Statistics", "StatsBase", "Tables"] +git-tree-sha1 = "64932df6c71608f4c6663dc1734a0e0f4ceb5839" uuid = "d491faf4-2d78-11e9-2867-c94bc002c0b7" -version = "0.8.2" +version = "0.9.4" [[MLJScientificTypes]] deps = ["CategoricalArrays", "ColorTypes", "PrettyTables", "ScientificTypes", "Tables"] -git-tree-sha1 = "6323b656a470e4b36cdc8170fb165aa961cf3ca1" +git-tree-sha1 = "6adfbd10b6bd353e3efcc585f44f551b7b75d60b" uuid = "2e2323e0-db8b-457b-ae0d-bdfb3bc63afd" -version = "0.2.1" +version = "0.2.4" [[MLJTuning]] -deps = ["ComputationalResources", "Distributed", "MLJBase", "Random", "RecipesBase"] -git-tree-sha1 = "df5bc120067d54f5cce9eef286ebcf2b1aaa9412" +deps = ["ComputationalResources", "Distributed", "Distributions", "MLJBase", "MLJModelInterface", "Random", "RecipesBase"] +git-tree-sha1 = "05d8530707c381a2464f2ff2f5faa14b0ee3e814" uuid = "03970b2e-30c4-11ea-3135-d1576263f10f" -version = "0.1.4" +version = "0.3.2" [[MacroTools]] -deps = ["DataStructures", "Markdown", "Random"] -git-tree-sha1 = "07ee65e03e28ca88bc9a338a3726ae0c3efaa94b" +deps = ["Markdown", "Random"] +git-tree-sha1 = "f7d2e3f654af75f01ec49be82c231c382214223a" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.4" +version = "0.5.5" [[Markdown]] deps = ["Base64"] @@ -575,9 +592,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MbedTLS]] deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"] -git-tree-sha1 = "709797fadd2d3b7e3f040a9f6e12726a6d6d2bf5" +git-tree-sha1 = "426a6978b03a97ceb7ead77775a1da066343ec6e" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.0.0" +version = "1.0.2" [[MbedTLS_jll]] deps = ["Libdl", "Pkg"] @@ -590,6 +607,12 @@ git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.1" +[[Memento]] +deps = ["Dates", "Distributed", "JSON", "Serialization", "Sockets", "Syslogs", "Test", "TimeZones", "UUIDs"] +git-tree-sha1 = "5b0f65a76a45d1e9a28f56c5c82743e4d0eecbe9" +uuid = "f28f55f0-a522-5efc-85c2-fe41dfb9b2d9" +version = "1.0.0" + [[Missings]] deps = ["DataAPI"] git-tree-sha1 = "de0a5ce9e5289f27df672ffabef4d1e5861247d5" @@ -625,9 +648,9 @@ version = "7.6.1" [[NNlib]] deps = ["BinaryProvider", "Libdl", "LinearAlgebra", "Requires", "Statistics"] -git-tree-sha1 = "755c0bab3912ff782167e1b4b774b833f8a0e550" +git-tree-sha1 = "d9f196d911f55aeaff11b11f681b135980783824" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.6.4" +version = "0.6.6" [[NaNMath]] git-tree-sha1 = "928b8ca9b2791081dc71a51c55347c27c618760f" @@ -647,15 +670,14 @@ uuid = "2bd173c7-0d6d-553b-b6af-13a54713934c" version = "1.1.1" [[Observables]] -deps = ["Test"] -git-tree-sha1 = "dc02cec22747d1d10d9f70d8a1c03432b5bfbcd0" +git-tree-sha1 = "11832878355305984235a2e90d0e3737383c634c" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.2.3" +version = "0.3.1" [[OffsetArrays]] -git-tree-sha1 = "707e34562700b81e8aa13548eb6b23b18112e49b" +git-tree-sha1 = "930db8ef90483570107f2396b1ffc6680f08e8b7" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.0.2" +version = "1.0.4" [[Ogg_jll]] deps = ["Libdl", "Pkg"] @@ -664,28 +686,28 @@ uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.3+0" [[OpenBLAS_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "adc45e596df7007d48bf6829efb1dc64fdec3ddc" +deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] +git-tree-sha1 = "2ee3e636e94b9fd95fa8364d5cba2e20dae16609" uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.7+6" +version = "0.3.9+2" [[OpenSSL_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "33661eb9d5484220b4367d067f499b30bafc9c12" +git-tree-sha1 = "d2a6f25262d568b5a7e454cf7ff5066a79d16c7d" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.1+1" +version = "1.1.1+2" [[OpenSpecFun_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] -git-tree-sha1 = "d110040968b9afe95c6bd9c6233570b0fe8abd22" +git-tree-sha1 = "d51c416559217d974a1113522d5919235ae67a87" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.3+2" +version = "0.5.3+3" [[Optim]] -deps = ["FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "08f170ff0dcf07f4edb567020fcab47f415da207" +deps = ["Compat", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "62054d469d3631960e3f472ceb8624be5b11c34d" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "0.20.1" +version = "0.20.6" [[Opus_jll]] deps = ["Libdl", "Pkg"] @@ -701,9 +723,9 @@ version = "1.1.0" [[PDMats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] -git-tree-sha1 = "5f303510529486bb02ac4d70da8295da38302194" +git-tree-sha1 = "2fc6f50ddd959e462f0a2dbc802ddf2a539c6e35" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.9.11" +version = "0.9.12" [[Parameters]] deps = ["OrderedCollections"] @@ -713,9 +735,9 @@ version = "0.12.0" [[Parsers]] deps = ["Dates", "Test"] -git-tree-sha1 = "d112c19ccca00924d5d3a38b11ae2b4b268dda39" +git-tree-sha1 = "75d07cb840c300084634b4991761886d0d762724" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "0.3.11" +version = "1.0.1" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -723,21 +745,21 @@ uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" [[PlotThemes]] deps = ["PlotUtils", "Requires", "Statistics"] -git-tree-sha1 = "df772cc7c78862da96af1ee85cd0111c6640e44e" +git-tree-sha1 = "87a4ea7f8c350d87d3a8ca9052663b633c0b2722" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "1.0.1" +version = "1.0.3" [[PlotUtils]] deps = ["Colors", "Dates", "Printf", "Random", "Reexport"] -git-tree-sha1 = "a146cb72ec962aec81d478de49d1011db06dd754" +git-tree-sha1 = "51e742162c97d35f714f9611619db6975e19384b" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "0.6.3" +version = "0.6.5" [[Plots]] deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] -git-tree-sha1 = "305a6ceea7c6bf063fce224e4bcc0e0e6ce10ced" +git-tree-sha1 = "f226ff9b8e391f6a10891563c370aae8beb5d792" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "0.29.3" +version = "0.29.9" [[PooledArrays]] deps = ["DataAPI"] @@ -758,9 +780,9 @@ version = "0.2.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "Parameters", "Reexport", "Tables"] -git-tree-sha1 = "57b5fc8b9e6d78dea86df4c30b806dd0778c4ee8" +git-tree-sha1 = "ac3cecc7254adfffb8fdbd2c83eaa247e14b02da" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "0.8.4" +version = "0.9.0" [[Printf]] deps = ["Unicode"] @@ -774,15 +796,15 @@ version = "1.2.0" [[PyCall]] deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"] -git-tree-sha1 = "ce0780857d129208c4e5a6d722486fb40ce11bf8" +git-tree-sha1 = "3a3fdb9000d35958c9ba2323ca7c4958901f115d" uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" -version = "1.91.3" +version = "1.91.4" [[PyPlot]] deps = ["Colors", "LaTeXStrings", "PyCall", "Sockets", "Test", "VersionParsing"] -git-tree-sha1 = "ccecc72cf5b41a5de686bd76999040050a8a3472" +git-tree-sha1 = "67dde2482fe1a72ef62ed93f8c239f947638e5a2" uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee" -version = "2.8.2" +version = "2.9.0" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -792,15 +814,15 @@ version = "2.3.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones"] -git-tree-sha1 = "cb2b11bbbb18a4317a1db0ef121626945c1db51e" +git-tree-sha1 = "820d9bf1ce85f99292656941482faa1e277e7247" uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.6.3" +version = "0.7.1" [[RDatasets]] deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "e2ec04fbd4e4a9129161fe2a5376fb49f8f29e68" +git-tree-sha1 = "4b5416052f975404c65faada929cb5b571ddca12" uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.6.6" +version = "0.6.7" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets"] @@ -848,9 +870,9 @@ version = "0.2.2+0" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[ScientificTypes]] -git-tree-sha1 = "9c232034bbee8c53173cdce83787bf8968b09d31" +git-tree-sha1 = "21e0540206c877f0862f95eecd1e4c8fa852431a" uuid = "321657f4-b219-11e9-178b-2701a2544e81" -version = "0.7.1" +version = "0.7.2" [[ScikitLearn]] deps = ["Compat", "Conda", "DataFrames", "DecisionTree", "Distributed", "GaussianMixtures", "GaussianProcesses", "IterTools", "LinearAlgebra", "MacroTools", "NBInclude", "Parameters", "Printf", "PyCall", "PyPlot", "RData", "RDatasets", "Random", "ScikitLearnBase", "SparseArrays", "StatsBase"] @@ -919,9 +941,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] -git-tree-sha1 = "be5c7d45daa449d12868f4466dbf5882242cf2d9" +git-tree-sha1 = "19bfcb46245f69ff4013b3df3b977a289852c3a1" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.32.1" +version = "0.32.2" [[StatsFuns]] deps = ["Rmath", "SpecialFunctions"] @@ -930,21 +952,27 @@ uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "0.9.4" [[StatsModels]] -deps = ["CategoricalArrays", "DataStructures", "LinearAlgebra", "ShiftedArrays", "SparseArrays", "StatsBase", "Tables"] -git-tree-sha1 = "0d0e21a1c3e8043cbc1c4dd4b4e4189b0449e8cf" +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "ShiftedArrays", "SparseArrays", "StatsBase", "Tables"] +git-tree-sha1 = "5a140e0bf5d92b2c5c0daa0dcefdadbb57c8a7fb" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.6" +version = "0.6.11" [[StatsPlots]] deps = ["Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "MultivariateStats", "Observables", "Plots", "RecipesBase", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "8341b688660c94ca036217f77604277d3f9e1542" +git-tree-sha1 = "388e6588a1e09e763b0f38c498aeb350b5f76828" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.14.0" +version = "0.14.5" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" +[[Syslogs]] +deps = ["Printf", "Sockets"] +git-tree-sha1 = "46badfcc7c6e74535cc7d833a91f4ac4f805f86d" +uuid = "cea106d9-e007-5e6c-ad93-58fe2094e9c4" +version = "0.3.0" + [[TableOperations]] deps = ["Tables", "Test"] git-tree-sha1 = "208630a14884abd110a8f8008b0882f0d0f5632c" @@ -959,9 +987,9 @@ version = "1.0.0" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"] -git-tree-sha1 = "a54b8ce702aa863eced47bade03123d4dca0db84" +git-tree-sha1 = "c45dcc27331febabc20d86cb3974ef095257dcf3" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.0.2" +version = "1.0.4" [[Test]] deps = ["Distributed", "InteractiveUtils", "Logging", "Random"] @@ -1005,33 +1033,39 @@ version = "0.6.2" [[WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "68f000f67654d07318d734b364a31233e465f49a" +git-tree-sha1 = "28ffe06d28b1ba8fdb2f36ec7bb079fac81bac0d" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.1" +version = "0.5.2" [[XGBoost]] -deps = ["BinaryProvider", "Libdl", "Printf", "Random", "SparseArrays", "Statistics", "Test"] -git-tree-sha1 = "b1299fe4d279e2a5ca67406a5eb640e5f71d19ce" +deps = ["Libdl", "Printf", "Random", "SparseArrays", "Statistics", "Test", "XGBoost_jll"] +git-tree-sha1 = "a338138a2d0d0f994e8806494a4c5ba1e94e096d" uuid = "009559a3-9522-5dbb-924b-0b6ed2b22bb9" -version = "0.4.2" +version = "0.4.3" + +[[XGBoost_jll]] +deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] +git-tree-sha1 = "977ff466cc5a4d6444076e9b1b488e187cbeb283" +uuid = "a5c6f535-4255-5ca2-a466-0e519f119c46" +version = "0.82.0+2" [[XML2_jll]] deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "ed5603a695aefe3e9e404fc7b052e02cc72cfab6" +git-tree-sha1 = "987c02a43fa10a491a5f0f7c46a6d3559ed6a8e2" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.9+1" +version = "2.9.9+4" [[Zlib_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "fd36a6739e256527287c5444960d0266712cd49e" +git-tree-sha1 = "2f6c3e15e20e036ee0a0965879b31442b7ec50fa" uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.11+8" +version = "1.2.11+9" [[Zygote]] -deps = ["DiffRules", "FFTW", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "54872ae5411c8795ed52852759796a04fb771f68" +deps = ["AbstractFFTs", "ArrayLayouts", "DiffRules", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "014e1f208bd5b43e26448ca31d971053f58bc20a" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.4.7" +version = "0.4.15" [[ZygoteRules]] deps = ["MacroTools"] @@ -1041,9 +1075,9 @@ version = "0.2.0" [[libass_jll]] deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "3fd3ea3525f2e3d337c54a52b2ca78a5a272bbf5" +git-tree-sha1 = "d0259e0624e08ae9ebae16c80257caabc25f2048" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.14.0+0" +version = "0.14.0+1" [[libfdk_aac_jll]] deps = ["Libdl", "Pkg"] diff --git a/Project.toml b/Project.toml index a6c10a11..357afef6 100644 --- a/Project.toml +++ b/Project.toml @@ -1,6 +1,6 @@ name = "MLJTutorials" uuid = "b22f6415-6e67-485c-b34d-7995e604d9c9" -version = "0.3.0" +version = "0.4.0" [deps] CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" @@ -37,24 +37,29 @@ Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" XGBoost = "009559a3-9522-5dbb-924b-0b6ed2b22bb9" [compat] -CSV = "^0.5" -CategoricalArrays = "^0.7" -LossFunctions = "^0.5" -MLJ = "^0.9" -MLJBase = "^0.11" -MLJLinearModels = "^0.3" -MLJModelInterface = "^0.1" -MLJModels = "^0.8" -MLJScientificTypes = "^0.2" -MultivariateStats = "^0.7" -NearestNeighbors = "^0.4" -PrettyPrinting = "^0.2" -PyPlot = "^2.8" -RDatasets = "^0.6" -ScikitLearn = "^0.5" -StatsBase = "^0.32" -Tables = "^1.0" -XGBoost = "^0.4" +CSV = "0.6" +CategoricalArrays = "0.7" +Clustering = "0.14" +Distances = "0.8" +Distributions = "0.23" +GLM = "1.3" +HTTP = "0.8" +LIBSVM = "0.4" +MLJ = "0.10" +MLJBase = "0.12" +MLJLinearModels = "0.3" +MLJModelInterface = "0.2" +MLJModels = "0.9" +MLJScientificTypes = "0.2" +MultivariateStats = "0.7" +NearestNeighbors = "0.4" +PrettyPrinting = "0.2" +PyPlot = "2.9" +RDatasets = "0.6" +ScikitLearn = "0.5" +StatsBase = "0.32" +Tables = "1" +XGBoost = "0.4" [extras] Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" diff --git a/_layout/head.html b/_layout/head.html index a400cc77..c97bbfb9 100644 --- a/_layout/head.html +++ b/_layout/head.html @@ -77,6 +77,7 @@