Skip to content

Commit 5dda446

Browse files
delagoyaAngel Pizarro
authored andcommitted
Fixed conda channel order for fq module (nf-core#7871) (nf-core#7873)
* Fixed conda channel order for fq module (nf-core#7871) By listing bioconda as the primary channel, the fq package can be installed and used in conda environments. modified: modules/nf-core/fq/generate/environment.yml modified: modules/nf-core/fq/lint/environment.yml modified: modules/nf-core/fq/subsample/environment.yml * added channel order comment to avoid a regression --------- Co-authored-by: Angel Pizarro <pizarroa@amazon.com>
1 parent 0ab89de commit 5dda446

3 files changed

Lines changed: 6 additions & 3 deletions

File tree

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
33
channels:
4-
- conda-forge
4+
# Having bioconda first here is intentional, see https://github.com/nf-core/modules/issues/7871
55
- bioconda
6+
- conda-forge
67
dependencies:
78
- bioconda::fq=0.12.0
Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
33
channels:
4-
- conda-forge
4+
# Having bioconda first here is intentional, see https://github.com/nf-core/modules/issues/7871
55
- bioconda
6+
- conda-forge
67
dependencies:
78
- bioconda::fq=0.12.0
Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
33
channels:
4-
- conda-forge
4+
# Having bioconda first here is intentional, see https://github.com/nf-core/modules/issues/7871
55
- bioconda
6+
- conda-forge
67
dependencies:
78
- bioconda::fq=0.12.0

0 commit comments

Comments
 (0)