diff --git a/Doxyfile b/Doxyfile
index fee90ee9..695a1b53 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -68,7 +68,7 @@ OUTPUT_DIRECTORY       = doxygen
 # performance problems for the file system.
 # The default value is: NO.
 
-CREATE_SUBDIRS         = YES
+CREATE_SUBDIRS         = NO
 
 # If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
 # characters to appear in the names of generated files. If set to NO, non-ASCII
diff --git a/doxybook-config.json b/doxybook-config.json
index 1f149505..1c674988 100644
--- a/doxybook-config.json
+++ b/doxybook-config.json
@@ -1,5 +1,5 @@
 {
-    "baseUrl": "/doxybook/",
+    "baseUrl": "../",
     "indexInFolders": true,
     "linkSuffix": "/",
     "mainPageInRoot": true,
diff --git a/mkdocs.yml b/mkdocs.yml
index e84fffb9..c4919ee4 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -17,12 +17,12 @@ nav:
     - Pathfinder Development: 
         - Contributing: contributing.md
     - API:
-        - Classes: /doxybook/Classes
-        - Namespaces: /doxybook/Namespaces
-        - Modules: /doxybook/Modules
-        - Files: /doxybook/Files
-        - Related Pages: /doxybook/Pages
-        - Examples: /doxybook/Examples
+        - Classes: doxybook/Classes/index.md
+        - Namespaces: doxybook/Namespaces/index.md
+        - Modules: doxybook/Modules/index.md
+        - Files: doxybook/Files/index.md
+        - Related Pages: doxybook/Pages/index.md
+        - Examples: doxybook/Examples/index.md
 theme: readthedocs
 markdown_extensions:
     - footnotes
diff --git a/mkdocs/doxybook/.gitkeep b/mkdocs/doxybook/.gitkeep
new file mode 100644
index 00000000..e69de29b