BrainStat/.github/workflows/python_unittests.yml at ff67c586bf6a349641a835cee88926bc2fbea906 · MICA-MNI/BrainStat · GitHub

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name: Python Unit Tests

on:
  push:
    branches:
      - master
  pull_request:

jobs:
  unittests:
    strategy:
      fail-fast: false
      matrix:
        # Python 3.12 cannot be exercised while pandas is pinned <2.1 (the
        # abagen groupby/pkg_resources workaround), because pandas 2.0.x
        # ships no wheels for 3.12 and cannot be built from source there.
        # Re-add 3.12 once abagen is patched and the pin is lifted.
        python-version: ['3.10', '3.11']
        os: [ubuntu-latest, windows-latest, macos-latest]

    runs-on: ${{ matrix.os }}
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}

    - name: Install Dependencies
      shell: bash
      run: |
        # setuptools 81+ no longer ships the legacy `pkg_resources` module on
        # import, but transitive deps (e.g. abagen 0.1.3 in
        # brainstat/context/genetics.py) still rely on it. Pin <81 so test
        # collection succeeds; revisit when abagen drops the pkg_resources
        # import.
        python -m pip install --upgrade pip
        python -m pip install 'setuptools<81' wheel
        [[ -z $(git remote show origin | grep "Fetch URL:" | grep git@github.com:MICA-MNI/BrainStat.git) ]] && git config remote.upstream.fetch refs/heads/*:refs/remotes/upstream/* || git config remote.origin.fetch refs/heads/*:refs/origin/upstream/*
        git fetch origin test-data-2.0
        python -m pip install -e .[dev]
        # Reinstall pinned setuptools in case the editable install pulled it
        # back up to 81+.
        python -m pip install --force-reinstall 'setuptools<81'

    - name: Test with pytest
      shell: bash
      run: |
        python3 -m pytest

  # mypy:
  #   runs-on: ubuntu-latest
  #   steps:
  #   - uses: actions/checkout@v2
  #   - name: Set up Python 3.9
  #     uses: actions/setup-python@v2
  #     with:
  #       python-version: 3.9

  #   - name: Install Dependencies
  #     shell: bash
  #     run: |
  #       python -m pip install -e .[dev]
  #       python -m pip install numpy==1.21.5

  #   - name: Test with mypy
  #     shell: bash
  #     run: |
  #       python3 -m mypy $(find brainstat -path "*tests*" -prune -false -o -name "*.py")

  # lint:
  #   runs-on: ubuntu-latest
  #   steps:
  #     - uses: actions/checkout@v2
  #     - uses: actions/setup-python@v2
  #       with:
  #         python-version: 3.8
  #     - uses: psf/black@stable
  #       with:
  #         black_args: ". --check"